Non-Coding RNA Search

Ss1.1-Pig2-14M22.5

Sequence:


               
               ATCTGGTTTGCTGAGAGCCCGGTCCAGCAGGTCCTGCTCTGACAATCTTTTGCCTCCTAT
TTGCTGCTATTCCCAGAGAGGAGTGGAGGGGAGGTGTGAGCCTGCATCTGGGGCCAAGGG
CTGATTAGAGAGTTTTGTTTGCCCTGCCCCGCGCTGGCTTTGCCTTGTTGGATTGCATTT
GTTCTGTCATCCTGATTCACCCTTTGAGGGTGAGTTACTAATTAACTTTTGCAGGTAGAC
TGGTAAGTCCTCATAGACTGTTTCCAGCTGTAGGCTGACGTCGAAGGCAAACAGGCTGTT
CACCTCCTGCTCCATCCTTTGGGCTGGATCCACATTCATTCCCACTCCACATCTTGGTCC
TACTGATGCCCAGAGTTCCTTAGAGGGCCCAAGAAAGGCTGAGTACCAGTAGCAATGGCC
ATTTGAGAATTCCTAGGCCCCATGTGCCAGCCTTCCTGGGACCTGAGCTGGCTCTGGGTT
TTCTTAGGCCCAATCTCACTGCTTCCTCAGGGCTCTTGTTCTCACAGATGCCTCAGGGTA
ATCTCTTCATTAGCAAAGTACTCACTAAAACTGGGGGCCTAGGGATTATAACCAGAGCTC
CTTCATCTGTGCTACCATGCTCTTTTACAGGAGACTCCATTCTAGTTGCCCTGTGTCCTT
GGGGCCCTGATCATAAGGTCAGCAGAGCCCCCTTCCTCTTTGTTCTCAGGCCGGCCAGGT
AGCCCCCTTCTTTGGGCTTTAAGTGCAAACTCTACTCTATGGTTCTGGGTTTGGGCAGGA
TTTTCTCCCAGGATACCACAGGGCAACTGTCAAGCTGCTTACCCCCTCCCCCTAGGGCTG
GGTGCGGTGCCCAGCCTTCTGATTTGTGCCTCTGTTGTGTTTGGGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGGTTTGCTGAGAGCCCGGTCCAGCAGGTCCTGCTCTGACAATCTTTTGCCTCCTAT
TTGCTGCTATTCCCAGAGAGGAGTGGAGGGGAGGTGTGAGCCTGCATCTGGGGCCAAGGG
CTGATTAGAGAGTTTTGTTTGCCCTGCCCCGCGCTGGCTTTGCCTTGTTGGATTGCATTT
GTTCTGTCATCCTGATTCACCCTTTGAGGGTGAGTTACTAATTAACTTTTGCAGGTAGAC
TGGTAAGTCCTCATAGACTGTTTCCAGCTGTAGGCTGACGTCGAAGGCAAACAGGCTGTT
CACCTCCTGCTCCATCCTTTGGGCTGGATCCACATTCATTCCCACTCCACATCTTGGTCC
TACTGATGCCCAGAGTTCCTTAGAGGGCCCAAGAAAGGCTGAGTACCAGTAGCAATGGCC
ATTTGAGAATTCCTAGGCCCCATGTGCCAGCCTTCCTGGGACCTGAGCTGGCTCTGGGTT
TTCTTAGGCCCAATCTCACTGCTTCCTCAGGGCTCTTGTTCTCACAGATGCCTCAGGGTA
ATCTCTTCATTAGCAAAGTACTCACTAAAACTGGGGGCCTAGGGATTATAACCAGAGCTC
CTTCATCTGTGCTACCATGCTCTTTTACAGGAGACTCCATTCTAGTTGCCCTGTGTCCTT
GGGGCCCTGATCATAAGGTCAGCAGAGCCCCCTTCCTCTTTGTTCTCAGGCCGGCCAGGT
AGCCCCCTTCTTTGGGCTTTAAGTGCAAACTCTACTCTATGGTTCTGGGTTTGGGCAGGA
TTTTCTCCCAGGATACCACAGGGCAACTGTCAAGCTGCTTACCCCCTCCCCCTAGGGCTG
GGTGCGGTGCCCAGCCTTCTGATTTGTGCCTCTGTTGTGTTTGGGGAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               382-528, - strand, RNAz p=0.993394
               

               
               569-683, - strand, RNAz p=0.759713
               

               
               763-882, + strand, RNAz p=0.744798

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               382-528, - strand, RNAz p=0.993394
               

               
               569-683, - strand, RNAz p=0.759713
               

               
               763-882, + strand, RNAz p=0.744798

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL133609, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL133609, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-887, gnl|bosTau2|chr2 (78138798-78139666)
               

               
               1-887, gnl|Hg17|chr1 (26287955-26288825)
               

               
               1-887, gnl|Mm7|chr4 (133509696-133508878)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-887, gnl|bosTau2|chr2 (78138798-78139666)
               

               
               1-887, gnl|Hg17|chr1 (26287955-26288825)
               

               
               1-887, gnl|Mm7|chr4 (133509696-133508878)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	382-528, - strand, RNAz p=0.993394
	569-683, - strand, RNAz p=0.759713
	763-882, + strand, RNAz p=0.744798

	1-887, gnl\|bosTau2\|chr2 (78138798-78139666)
	1-887, gnl\|Hg17\|chr1 (26287955-26288825)
	1-887, gnl\|Mm7\|chr4 (133509696-133508878)