Non-Coding RNA Search

Ss1.1-Pig2-15I23.5

Sequence:


               
               GTGTAGATGTCTGCTTCTGCTGTACATCTTTCAGTAGGTATAGCTTTGCCAGAGCTGATG
ATCTAGAACATGAACGTAATCTACCAACAAAACTCAGTTTCTACTGCGATTTGACACGTC
CGTCGTATTTAAATAGCTTAGAATTACAGAAGCCACAGTACTCAATGAGTGTGTAAATAA
GAAAGTCTTTAGTTTTGATAGCAATTCTTTAATTGGGAGACGCAGAGAGATTCTTCCTGG
GTCAGTGCAGTGGGAGGATTTTGGTGAAAGTCAACCATGTCTCTCTGAAATGGCCCTTTT
AGATTCCGTCATCCATTTCCCTTCCTGCATTCTCCATCCACTTTTGAAGCCCTTCTGAAT
GTTGACTTGTTCATAAGCTAAAATTTAAGAGGAAAATTCAGCTGACAACTTAGAACATTC
AAATCGTGGTGGATCGCCAGACTCTGGTGTGTGGCTACCCACATTTTATCAGGGAAAATT
TTTTGATGTAGGATTAATTGCTAGCTGAAAAGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTAGATGTCTGCTTCTGCTGTACATCTTTCAGTAGGTATAGCTTTGCCAGAGCTGATG
ATCTAGAACATGAACGTAATCTACCAACAAAACTCAGTTTCTACTGCGATTTGACACGTC
CGTCGTATTTAAATAGCTTAGAATTACAGAAGCCACAGTACTCAATGAGTGTGTAAATAA
GAAAGTCTTTAGTTTTGATAGCAATTCTTTAATTGGGAGACGCAGAGAGATTCTTCCTGG
GTCAGTGCAGTGGGAGGATTTTGGTGAAAGTCAACCATGTCTCTCTGAAATGGCCCTTTT
AGATTCCGTCATCCATTTCCCTTCCTGCATTCTCCATCCACTTTTGAAGCCCTTCTGAAT
GTTGACTTGTTCATAAGCTAAAATTTAAGAGGAAAATTCAGCTGACAACTTAGAACATTC
AAATCGTGGTGGATCGCCAGACTCTGGTGTGTGGCTACCCACATTTTATCAGGGAAAATT
TTTTGATGTAGGATTAATTGCTAGCTGAAAAGAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               399-515, - strand, RNAz p=0.981691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-515, - strand, RNAz p=0.981691

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-515, gnl|bosTau2|chr21 (36501656-36501156)
               

               
               1-515, gnl|canFam2|chr8 (4319018-4319396)
               

               
               1-515, gnl|dasNov1|scaffold_12274 (50589-50205)
               

               
               1-515, gnl|echTel1|scaffold_302368 (11594-11230)
               

               
               1-515, gnl|hg17|chr14 (91598838-91599227)
               

               
               1-515, gnl|Hg17|chr14 (91599382-91598879)
               

               
               1-515, gnl|mm7|chr12 (99417057-99417439)
               

               
               1-515, gnl|Mm7|chr12 (99417622-99417095)
               

               
               1-515, gnl|monDom2|scaffold_8 (29928670-29929046)
               

               
               1-515, gnl|oryCun1|scaffold_175818 (3871-3498)
               

               
               1-515, gnl|panTro1|chr15 (91977581-91977970)
               

               
               1-515, gnl|rn3|chr6 (126200254-126200639)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-515, gnl|bosTau2|chr21 (36501656-36501156)
               

               
               1-515, gnl|canFam2|chr8 (4319018-4319396)
               

               
               1-515, gnl|dasNov1|scaffold_12274 (50589-50205)
               

               
               1-515, gnl|echTel1|scaffold_302368 (11594-11230)
               

               
               1-515, gnl|hg17|chr14 (91598838-91599227)
               

               
               1-515, gnl|Hg17|chr14 (91599382-91598879)
               

               
               1-515, gnl|mm7|chr12 (99417057-99417439)
               

               
               1-515, gnl|Mm7|chr12 (99417622-99417095)
               

               
               1-515, gnl|monDom2|scaffold_8 (29928670-29929046)
               

               
               1-515, gnl|oryCun1|scaffold_175818 (3871-3498)
               

               
               1-515, gnl|panTro1|chr15 (91977581-91977970)
               

               
               1-515, gnl|rn3|chr6 (126200254-126200639)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               nje (0.16592)
               

               
               lin (0.145603)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               lin (0.145603)

	1-515, gnl\|bosTau2\|chr21 (36501656-36501156)
	1-515, gnl\|canFam2\|chr8 (4319018-4319396)
	1-515, gnl\|dasNov1\|scaffold_12274 (50589-50205)
	1-515, gnl\|echTel1\|scaffold_302368 (11594-11230)
	1-515, gnl\|hg17\|chr14 (91598838-91599227)
	1-515, gnl\|Hg17\|chr14 (91599382-91598879)
	1-515, gnl\|mm7\|chr12 (99417057-99417439)
	1-515, gnl\|Mm7\|chr12 (99417622-99417095)
	1-515, gnl\|monDom2\|scaffold_8 (29928670-29929046)
	1-515, gnl\|oryCun1\|scaffold_175818 (3871-3498)
	1-515, gnl\|panTro1\|chr15 (91977581-91977970)
	1-515, gnl\|rn3\|chr6 (126200254-126200639)