Ss1.1-Pig2-15N08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATTTAGATGGGAAGAAGGAGGCCGAGGAAGATCAAAGCAAGAGCTACAAACAGAAAGAA GAAAGCAGACTGAAATTGGCTAAACTGCTGCTCTGCGGCACTGAGTTGGTGACAAACATC CAGGTAGCTGCAGATATCAGAGAGATCCACAGGAGAGTCGAGGAAGAGGAGATAAAGCGC CAGAGGAATTAAAGATGAAAGATGACCAGTACGTGAAGGATTTGAAGAAACAGGCAGATG ACATCTGCCTGCTCCTGGAGAGGATGGAGGAGCAGGTGAAGAATGTAATGAAAACCTTTC GCCAGGAGCTTCATCACATCGAGAAAGCGTTTGAGGTGGAGCGACACGAGCTGCTGACGA GCAATAAGAAGAAATGGGAGCGGGCCCTGCAGGCGCACAACGCCAAGGAGCTGGAGTATC TCATGAGCCGCATCAAGAAAGTGGAGGACTACGAGCAGCAGCTCAACAGGCAGAGGATCT GGGACTGCGAAGAGTACAACGTGATCAAGATCAAGCTGGAGCAGGACGTGCAGATTCTTG AGCAACAGCTTCAGCAAATGAAGGCCACTTATCAGCTAAACCAAGAGAAGTTAGAGTACA ACTTCCAGGTGCTGAAGAAGCGGGATGAAGAAAGCACAGTGATCAAATCCCAGCAGAAGA GGAAGATCAACCGCCTGCATGATGTACTCAACAATCTGAGATCAAAATATAACAAGCAGA TAAAGCAGTTTCAGGAGGAGAACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATTTAGATGGGAAGAAGGAGGCCGAGGAAGATCAAAGCAAGAGCTACAAACAGAAAGAA GAAAGCAGACTGAAATTGGCTAAACTGCTGCTCTGCGGCACTGAGTTGGTGACAAACATC CAGGTAGCTGCAGATATCAGAGAGATCCACAGGAGAGTCGAGGAAGAGGAGATAAAGCGC CAGAGGAATTAAAGATGAAAGATGACCAGTACGTGAAGGATTTGAAGAAACAGGCAGATG ACATCTGCCTGCTCCTGGAGAGGATGGAGGAGCAGGTGAAGAATGTAATGAAAACCTTTC GCCAGGAGCTTCATCACATCGAGAAAGCGTTTGAGGTGGAGCGACACGAGCTGCTGACGA GCAATAAGAAGAAATGGGAGCGGGCCCTGCAGGCGCACAACGCCAAGGAGCTGGAGTATC TCATGAGCCGCATCAAGAAAGTGGAGGACTACGAGCAGCAGCTCAACAGGCAGAGGATCT GGGACTGCGAAGAGTACAACGTGATCAAGATCAAGCTGGAGCAGGACGTGCAGATTCTTG AGCAACAGCTTCAGCAAATGAAGGCCACTTATCAGCTAAACCAAGAGAAGTTAGAGTACA ACTTCCAGGTGCTGAAGAAGCGGGATGAAGAAAGCACAGTGATCAAATCCCAGCAGAAGA GGAAGATCAACCGCCTGCATGATGTACTCAACAATCTGAGATCAAAATATAACAAGCAGA TAAAGCAGTTTCAGGAGGAGAACC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 204-323, + strand, RNAz p=0.516636 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 204-323, + strand, RNAz p=0.516636 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 184-323, gnl|bosTau2|chr11 (54873426-54873565) | |
| 184-323, gnl|canFam2|chr17 (23476775-23476946) | |
| 184-323, gnl|danRer3|chr20 (42199179-42199325) | |
| 184-323, gnl|echTel1|scaffold_319207 (44474-44303) | |
| 184-323, gnl|fr1|chrUn (210111982-210111850) | |
| 184-323, gnl|hg17|chr2 (26564116-26564287) | |
| 184-323, gnl|Hg17|chr2 (26564145-26564284) | |
| 184-323, gnl|loxAfr1|scaffold_12385 (17478-17649) | |
| 184-323, gnl|mm7|chr5 (29379436-29379607) | |
| 184-323, gnl|Mm7|chr5 (29379465-29379604) | |
| 184-323, gnl|monDom2|scaffold_1 (150261436-150261265) | |
| 184-323, gnl|oryCun1|scaffold_214661 (84529-84700) | |
| 184-323, gnl|panTro1|chr12 (27479566-27479737) | |
| 184-323, gnl|rheMac2|chr13 (26370675-26370846) | |
| 184-323, gnl|rn3|chr6 (26032829-26032659) | |
| 184-323, gnl|tetNig1|chr14 (3475301-3475410) | |
| 532-673, gnl|bosTau2|chr11 (54883357-54883498) | |
| 532-673, gnl|canFam2|chr17 (23484210-23484385) | |
| 532-673, gnl|danRer3|chr20 (42199825-42199979) | |
| 532-673, gnl|dasNov1|scaffold_9084 (44934-45110) | |
| 532-673, gnl|echTel1|scaffold_319207 (32421-32236) | |
| 532-673, gnl|hg17|chr2 (26574879-26575063) | |
| 532-673, gnl|Hg17|chr2 (26574895-26575036) | |
| 532-673, gnl|loxAfr1|scaffold_12385 (37167-37350) | |
| 532-673, gnl|mm7|chr5 (29387491-29387672) | |
| 532-673, gnl|Mm7|chr5 (29387514-29387655) | |
| 532-673, gnl|monDom2|scaffold_1 (150251753-150251559) | |
| 532-673, gnl|oryCun1|scaffold_214661 (89485-89653) | |
| 532-673, gnl|panTro1|chr12 (27489646-27489830) | |
| 532-673, gnl|rheMac2|chr13 (26381834-26382020) | |
| 532-673, gnl|rn3|chr6 (26022830-26022639) | |
| 532-673, gnl|xenTro1|scaffold_232 (1391792-1391955) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 184-323, gnl|bosTau2|chr11 (54873426-54873565) | |
| 184-323, gnl|canFam2|chr17 (23476775-23476946) | |
| 184-323, gnl|danRer3|chr20 (42199179-42199325) | |
| 184-323, gnl|echTel1|scaffold_319207 (44474-44303) | |
| 184-323, gnl|fr1|chrUn (210111982-210111850) | |
| 184-323, gnl|hg17|chr2 (26564116-26564287) | |
| 184-323, gnl|Hg17|chr2 (26564145-26564284) | |
| 184-323, gnl|loxAfr1|scaffold_12385 (17478-17649) | |
| 184-323, gnl|mm7|chr5 (29379436-29379607) | |
| 184-323, gnl|Mm7|chr5 (29379465-29379604) | |
| 184-323, gnl|monDom2|scaffold_1 (150261436-150261265) | |
| 184-323, gnl|oryCun1|scaffold_214661 (84529-84700) | |
| 184-323, gnl|panTro1|chr12 (27479566-27479737) | |
| 184-323, gnl|rheMac2|chr13 (26370675-26370846) | |
| 184-323, gnl|rn3|chr6 (26032829-26032659) | |
| 184-323, gnl|tetNig1|chr14 (3475301-3475410) | |
| 532-673, gnl|bosTau2|chr11 (54883357-54883498) | |
| 532-673, gnl|canFam2|chr17 (23484210-23484385) | |
| 532-673, gnl|danRer3|chr20 (42199825-42199979) | |
| 532-673, gnl|dasNov1|scaffold_9084 (44934-45110) | |
| 532-673, gnl|echTel1|scaffold_319207 (32421-32236) | |
| 532-673, gnl|hg17|chr2 (26574879-26575063) | |
| 532-673, gnl|Hg17|chr2 (26574895-26575036) | |
| 532-673, gnl|loxAfr1|scaffold_12385 (37167-37350) | |
| 532-673, gnl|mm7|chr5 (29387491-29387672) | |
| 532-673, gnl|Mm7|chr5 (29387514-29387655) | |
| 532-673, gnl|monDom2|scaffold_1 (150251753-150251559) | |
| 532-673, gnl|oryCun1|scaffold_214661 (89485-89653) | |
| 532-673, gnl|panTro1|chr12 (27489646-27489830) | |
| 532-673, gnl|rheMac2|chr13 (26381834-26382020) | |
| 532-673, gnl|rn3|chr6 (26022830-26022639) | |
| 532-673, gnl|xenTro1|scaffold_232 (1391792-1391955) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) |