Non-Coding RNA Search

Ss1.1-Pig2-17E18.5

Sequence:


               
               GCTGGAGGCAGACGAGCAACAGCTGGAGCTGCAGCAGGAAGTGGAGCGCCTGCGCAGTGC
CCAGGTGCAGACGGAACGCACCCTGGAGGCGCGGGAGCGGGCCCACCGGCAGAGGGTGCG
TGGGCTGGAGGAGCAGGTGTCCACCCTGAAGGGACAGTTGCAGAAGGAGCTTCGAAGGGG
CTCAGCTTCCTTCTCCCTCTCCTCCGGCCCCCCAGAGAAGTGAGAACCCCCATGGCAGCG
TCGTGGAGAGTAGGCCCAGGGCTCCCTCGGCACAGTCCATCCAGAGCCTCAGCACAGTCC
ACCCACAGGAGGAGCTGGCGAGGTGGTGCTGGGGGAAGGGGGTACCCGAGGACCAGGCCA
GACCCAGCAGCGGCCTCCCAGCCTCCGTAGAGCCCCCTGTCCTTTGTGGGCCCCACGTCA
GGCCAGCCCCTCCCCCTGGGATGAGCCCCCGTGGATCCTGTGAGATCCTCCCTGAGCCAA
AGCCAGCGGGTGGGGAGACCCCGCTGTCTCGGGCCAACCCTGGCGCGCAGGCTCGTGGGA
AGAGGAGGGGTGTCCCANCCTCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGAGGCAGACGAGCAACAGCTGGAGCTGCAGCAGGAAGTGGAGCGCCTGCGCAGTGC
CCAGGTGCAGACGGAACGCACCCTGGAGGCGCGGGAGCGGGCCCACCGGCAGAGGGTGCG
TGGGCTGGAGGAGCAGGTGTCCACCCTGAAGGGACAGTTGCAGAAGGAGCTTCGAAGGGG
CTCAGCTTCCTTCTCCCTCTCCTCCGGCCCCCCAGAGAAGTGAGAACCCCCATGGCAGCG
TCGTGGAGAGTAGGCCCAGGGCTCCCTCGGCACAGTCCATCCAGAGCCTCAGCACAGTCC
ACCCACAGGAGGAGCTGGCGAGGTGGTGCTGGGGGAAGGGGGTACCCGAGGACCAGGCCA
GACCCAGCAGCGGCCTCCCAGCCTCCGTAGAGCCCCCTGTCCTTTGTGGGCCCCACGTCA
GGCCAGCCCCTCCCCCTGGGATGAGCCCCCGTGGATCCTGTGAGATCCTCCCTGAGCCAA
AGCCAGCGGGTGGGGAGACCCCGCTGTCTCGGGCCAACCCTGGCGCGCAGGCTCGTGGGA
AGAGGAGGGGTGTCCCANCCTCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               20-121, - strand, RNAz p=0.62001

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-121, - strand, RNAz p=0.62001

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               20-138, gnl|bosTau2|chr2 (86123576-86123459)
               

               
               20-138, gnl|canFam2|chr2 (84121841-84121661)
               

               
               20-138, gnl|danRer3|chr5 (34048574-34048749)
               

               
               20-138, gnl|echTel1|scaffold_263051 (2169-2342)
               

               
               20-138, gnl|fr1|chrUn (46234053-46233880)
               

               
               20-138, gnl|hg17|chr1 (17043262-17043446)
               

               
               20-138, gnl|Hg17|chr1 (17043315-17043450)
               

               
               20-138, gnl|loxAfr1|scaffold_6872 (66362-66181)
               

               
               20-138, gnl|mm7|chr4 (140396480-140396299)
               

               
               20-138, gnl|Mm7|chr4 (140396422-140396293)
               

               
               20-138, gnl|monDom2|scaffold_815 (15175-15008)
               

               
               20-138, gnl|oryCun1|scaffold_71951 (236-90)
               

               
               20-138, gnl|panTro1|chr1 (17214061-17214245)
               

               
               20-138, gnl|rheMac2|chr1 (19597861-19598048)
               

               
               20-138, gnl|rn3|chr5 (159886808-159886627)
               

               
               20-138, gnl|tetNig1|chr11 (5785252-5785425)
               

               
               20-138, gnl|xenTro1|scaffold_1056 (59937-60110)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-138, gnl|bosTau2|chr2 (86123576-86123459)
               

               
               20-138, gnl|canFam2|chr2 (84121841-84121661)
               

               
               20-138, gnl|danRer3|chr5 (34048574-34048749)
               

               
               20-138, gnl|echTel1|scaffold_263051 (2169-2342)
               

               
               20-138, gnl|fr1|chrUn (46234053-46233880)
               

               
               20-138, gnl|hg17|chr1 (17043262-17043446)
               

               
               20-138, gnl|Hg17|chr1 (17043315-17043450)
               

               
               20-138, gnl|loxAfr1|scaffold_6872 (66362-66181)
               

               
               20-138, gnl|mm7|chr4 (140396480-140396299)
               

               
               20-138, gnl|Mm7|chr4 (140396422-140396293)
               

               
               20-138, gnl|monDom2|scaffold_815 (15175-15008)
               

               
               20-138, gnl|oryCun1|scaffold_71951 (236-90)
               

               
               20-138, gnl|panTro1|chr1 (17214061-17214245)
               

               
               20-138, gnl|rheMac2|chr1 (19597861-19598048)
               

               
               20-138, gnl|rn3|chr5 (159886808-159886627)
               

               
               20-138, gnl|tetNig1|chr11 (5785252-5785425)
               

               
               20-138, gnl|xenTro1|scaffold_1056 (59937-60110)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	20-138, gnl\|bosTau2\|chr2 (86123576-86123459)
	20-138, gnl\|canFam2\|chr2 (84121841-84121661)
	20-138, gnl\|danRer3\|chr5 (34048574-34048749)
	20-138, gnl\|echTel1\|scaffold_263051 (2169-2342)
	20-138, gnl\|fr1\|chrUn (46234053-46233880)
	20-138, gnl\|hg17\|chr1 (17043262-17043446)
	20-138, gnl\|Hg17\|chr1 (17043315-17043450)
	20-138, gnl\|loxAfr1\|scaffold_6872 (66362-66181)
	20-138, gnl\|mm7\|chr4 (140396480-140396299)
	20-138, gnl\|Mm7\|chr4 (140396422-140396293)
	20-138, gnl\|monDom2\|scaffold_815 (15175-15008)
	20-138, gnl\|oryCun1\|scaffold_71951 (236-90)
	20-138, gnl\|panTro1\|chr1 (17214061-17214245)
	20-138, gnl\|rheMac2\|chr1 (19597861-19598048)
	20-138, gnl\|rn3\|chr5 (159886808-159886627)
	20-138, gnl\|tetNig1\|chr11 (5785252-5785425)
	20-138, gnl\|xenTro1\|scaffold_1056 (59937-60110)