Non-Coding RNA Search

Ss1.1-Pig2-17F06.5

Sequence:


               
               GAGCCTCGTCTCCGTCCTCGCACGGAAGGACCTGTACCACGTGGTCACCGGGGGCGTCCC
CGAGACCACGGAGCTGCTCAAGGAGCGATTCGACCACATCCTGTACACGGGGAGCCCAGG
CATCGGGAAGGTCGTTATGACGGCTGCGGCCAAGCACCTGACCCCCGTCACGCTGGAGCT
GGGGGGCAAGAACCCCTGCTACGTGGACAAGGACTGCGACCTGGACGTGGCCTGCAGACG
CATCGCCTGGGGCAAGTTCATGAACAGCGGCCAGACCTGCGTGGGCCCCGACTACATCCT
CTGTGACCCCTCAATCCAGAACCAAATCGTGGAGAAGCTCAAAAAGTCCCTGAAAGAGTT
CTACGGGGAGGATGCCAGGAAGTCCCGTGACTACGGAAGAATCATTAACTCCCGGCACTT
CCAGAGGGTGATGGGCCTGCTGGAGGGCCAGAAAGTCGCCTACGGAGGCACGGGCGACGC
GGCCACCCGGTACATAGCCCCCACCATCCTCACGGATGTGGACCCCCAGTCCCAGGTGAT
GCAGGAGGAGATCTTCGGGCCCCTTATGCCCATCGTGTGTGTGGGCAGCCTGGAGGAGGC
CATTCGGTTCATCAACCAGCGCGAGAAGCCCCTGGCTCTCTACGTGTTCTCCCTCCATGA
CAAGGTGATTCAGAAGATGATCGCCGAGACCTCGAGCGGAGGCGTGACGGCCAATGACGT
CATCGTCCACATCACCGTGCCCTCTCTGCCCTTCGGGGGCGTGGGGAACAGCGGCATGGG
GTCCTACCACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCTCGTCTCCGTCCTCGCACGGAAGGACCTGTACCACGTGGTCACCGGGGGCGTCCC
CGAGACCACGGAGCTGCTCAAGGAGCGATTCGACCACATCCTGTACACGGGGAGCCCAGG
CATCGGGAAGGTCGTTATGACGGCTGCGGCCAAGCACCTGACCCCCGTCACGCTGGAGCT
GGGGGGCAAGAACCCCTGCTACGTGGACAAGGACTGCGACCTGGACGTGGCCTGCAGACG
CATCGCCTGGGGCAAGTTCATGAACAGCGGCCAGACCTGCGTGGGCCCCGACTACATCCT
CTGTGACCCCTCAATCCAGAACCAAATCGTGGAGAAGCTCAAAAAGTCCCTGAAAGAGTT
CTACGGGGAGGATGCCAGGAAGTCCCGTGACTACGGAAGAATCATTAACTCCCGGCACTT
CCAGAGGGTGATGGGCCTGCTGGAGGGCCAGAAAGTCGCCTACGGAGGCACGGGCGACGC
GGCCACCCGGTACATAGCCCCCACCATCCTCACGGATGTGGACCCCCAGTCCCAGGTGAT
GCAGGAGGAGATCTTCGGGCCCCTTATGCCCATCGTGTGTGTGGGCAGCCTGGAGGAGGC
CATTCGGTTCATCAACCAGCGCGAGAAGCCCCTGGCTCTCTACGTGTTCTCCCTCCATGA
CAAGGTGATTCAGAAGATGATCGCCGAGACCTCGAGCGGAGGCGTGACGGCCAATGACGT
CATCGTCCACATCACCGTGCCCTCTCTGCCCTTCGGGGGCGTGGGGAACAGCGGCATGGG
GTCCTACCACGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51476787|emb|CAH18356.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51476787|emb|CAH18356.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-237, gnl|bosTau2|chr19 (24605819-24606055)
               

               
               1-237, gnl|Hg17|chr17 (19586145-19585909)
               

               
               1-237, gnl|Mm7|chr11 (61296081-61296316)
               


               
               467-667, gnl|bosTau2|chr19 (24607877-24608079)
               

               
               467-667, gnl|Hg17|chr17 (19583614-19583410)
               

               
               467-667, gnl|Mm7|chr11 (61298604-61298808)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-237, gnl|bosTau2|chr19 (24605819-24606055)
               

               
               1-237, gnl|Hg17|chr17 (19586145-19585909)
               

               
               1-237, gnl|Mm7|chr11 (61296081-61296316)
               


               
               467-667, gnl|bosTau2|chr19 (24607877-24608079)
               

               
               467-667, gnl|Hg17|chr17 (19583614-19583410)
               

               
               467-667, gnl|Mm7|chr11 (61298604-61298808)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-237, gnl\|bosTau2\|chr19 (24605819-24606055)
	1-237, gnl\|Hg17\|chr17 (19586145-19585909)
	1-237, gnl\|Mm7\|chr11 (61296081-61296316)

	467-667, gnl\|bosTau2\|chr19 (24607877-24608079)
	467-667, gnl\|Hg17\|chr17 (19583614-19583410)
	467-667, gnl\|Mm7\|chr11 (61298604-61298808)