Non-Coding RNA Search

Ss1.1-Pig2-17H06.3

Sequence:


               
               GGCCTGCGACATGCACGTGGCTGACATGCTGGTGAGGGTGAACGCGCTCATCAAGGAGCG
TGAAGGCTACGCACCCGGCACCGAGTTCCACCGCTGCAAGGAGATGTCCGAGTACTGCAG
CACCCTGTGCCGCCGCCTCTATCTCTTCCCGGGACAGCCTCCCGCGTGATGCCACGTGGA
GGCCGCTGGGCCGTGGGAGGCGTGAGACAGCCTCGTCTCTGCAGGATGCACGGTTTCTGT
TCCTCGCCCTCAGGGACTGGGAGTCTCCCAGGCTCGCCGCCTTTGAGAAGGGCCTGCAGG
CCAGCCCTTCCTGAGCGACGCACTCTCCCTGCAGAGCCAGCTCTGGCTGGACTCTTTGCC
AGGAGTGTTTGGTTGCCGCCGAGAAGCCTGGCAAAGGAGCTTTAAGAAATGGTGTTTATG
GGGAGAGGGCGTGTGGGTGTCCGCAGTGTTTGTGTGCAGTTTCTGCCCCGAGGGCTTTTG
TAGGAAGCGGTTTGATCATTGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTGCGACATGCACGTGGCTGACATGCTGGTGAGGGTGAACGCGCTCATCAAGGAGCG
TGAAGGCTACGCACCCGGCACCGAGTTCCACCGCTGCAAGGAGATGTCCGAGTACTGCAG
CACCCTGTGCCGCCGCCTCTATCTCTTCCCGGGACAGCCTCCCGCGTGATGCCACGTGGA
GGCCGCTGGGCCGTGGGAGGCGTGAGACAGCCTCGTCTCTGCAGGATGCACGGTTTCTGT
TCCTCGCCCTCAGGGACTGGGAGTCTCCCAGGCTCGCCGCCTTTGAGAAGGGCCTGCAGG
CCAGCCCTTCCTGAGCGACGCACTCTCCCTGCAGAGCCAGCTCTGGCTGGACTCTTTGCC
AGGAGTGTTTGGTTGCCGCCGAGAAGCCTGGCAAAGGAGCTTTAAGAAATGGTGTTTATG
GGGAGAGGGCGTGTGGGTGTCCGCAGTGTTTGTGTGCAGTTTCTGCCCCGAGGGCTTTTG
TAGGAAGCGGTTTGATCATTGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19743694|gb|AAL92526.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19743694|gb|AAL92526.1|

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               37-174, gnl|bosTau2|chr4 (59184194-59184057)
               

               
               37-174, gnl|canFam2|chr16 (9360868-9360731)
               

               
               37-174, gnl|danRer3|chr16 (10616945-10616805)
               

               
               37-174, gnl|echTel1|scaffold_121377 (149-9)
               

               
               37-174, gnl|fr1|chrUn (227522186-227522316)
               

               
               37-174, gnl|galGal2|chr1 (71753149-71753012)
               

               
               37-174, gnl|hg17|chr7 (142518866-142519003)
               

               
               37-174, gnl|Hg17|chr7 (142518869-142519006)
               

               
               37-174, gnl|loxAfr1|scaffold_48188 (29706-29842)
               

               
               37-174, gnl|mm7|chr6 (42223324-42223461)
               

               
               37-174, gnl|Mm7|chr6 (42223327-42223463)
               

               
               37-174, gnl|monDom2|scaffold_7 (1900706-1900843)
               

               
               37-174, gnl|panTro1|chr6 (145316018-145316155)
               

               
               37-174, gnl|rn3|chr4 (70321104-70321241)
               

               
               37-174, gnl|tetNig1|chr8 (8826651-8826781)
               

               
               37-174, gnl|xenTro1|scaffold_337 (226946-227086)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-174, gnl|bosTau2|chr4 (59184194-59184057)
               

               
               37-174, gnl|canFam2|chr16 (9360868-9360731)
               

               
               37-174, gnl|danRer3|chr16 (10616945-10616805)
               

               
               37-174, gnl|echTel1|scaffold_121377 (149-9)
               

               
               37-174, gnl|fr1|chrUn (227522186-227522316)
               

               
               37-174, gnl|galGal2|chr1 (71753149-71753012)
               

               
               37-174, gnl|hg17|chr7 (142518866-142519003)
               

               
               37-174, gnl|Hg17|chr7 (142518869-142519006)
               

               
               37-174, gnl|loxAfr1|scaffold_48188 (29706-29842)
               

               
               37-174, gnl|mm7|chr6 (42223324-42223461)
               

               
               37-174, gnl|Mm7|chr6 (42223327-42223463)
               

               
               37-174, gnl|monDom2|scaffold_7 (1900706-1900843)
               

               
               37-174, gnl|panTro1|chr6 (145316018-145316155)
               

               
               37-174, gnl|rn3|chr4 (70321104-70321241)
               

               
               37-174, gnl|tetNig1|chr8 (8826651-8826781)
               

               
               37-174, gnl|xenTro1|scaffold_337 (226946-227086)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	37-174, gnl\|bosTau2\|chr4 (59184194-59184057)
	37-174, gnl\|canFam2\|chr16 (9360868-9360731)
	37-174, gnl\|danRer3\|chr16 (10616945-10616805)
	37-174, gnl\|echTel1\|scaffold_121377 (149-9)
	37-174, gnl\|fr1\|chrUn (227522186-227522316)
	37-174, gnl\|galGal2\|chr1 (71753149-71753012)
	37-174, gnl\|hg17\|chr7 (142518866-142519003)
	37-174, gnl\|Hg17\|chr7 (142518869-142519006)
	37-174, gnl\|loxAfr1\|scaffold_48188 (29706-29842)
	37-174, gnl\|mm7\|chr6 (42223324-42223461)
	37-174, gnl\|Mm7\|chr6 (42223327-42223463)
	37-174, gnl\|monDom2\|scaffold_7 (1900706-1900843)
	37-174, gnl\|panTro1\|chr6 (145316018-145316155)
	37-174, gnl\|rn3\|chr4 (70321104-70321241)
	37-174, gnl\|tetNig1\|chr8 (8826651-8826781)
	37-174, gnl\|xenTro1\|scaffold_337 (226946-227086)