Non-Coding RNA Search

Ss1.1-Pig2-17H24.5

Sequence:


               
               GCGGAAGTGGAAGCGCTACCTCCTGATAGGCCTGGCCACCGTGGGAGGCGGGACAGTGAT
CGGCGTGACCGGGGGTCTGGCTGCCCCTCTTGTGGCTGCTGGAGCCGCGACAATCATTGG
CAGCGCCGGGGCAGCGGCTCTGGGCTCAGCGGCTGGCATCGCGGTCATGACCTCGCTGTT
CGGTGCAGCTGGAGCTGGCCTGACAGGCTACAAGATGAAGAAGCGCGTCGGGGCCATTGA
AGAGTTCACATTTCTGCCTCTGACGGAAGGCAGGCAGCTCCATATCACCATTGCCATCAC
GGGGTGGCTGGCATCCGGCAAATACCGCACCTTCAGCGCCCCGTGGGCTGCCCTGGCCCG
CAGCCGAGAGCAGTACTGCCTGGCCTGGGAGGCCAAGTACCTGATGGAGCTCGGCAATGC
CCTGGAGACCATCCTCAGTGGTCTTGCCAACATGGTGGCCCAGGAGGCCCTAAAGACACG
GTATTGTCCGGCATTGTGGCTGCCCTGACCTGGCCAGCCTCACTCCTATCTGGCGCCAGT
GACATTGACAACCCCTGGGGCGTGTGTCTCCATCGGTCAGCAGAGGTCGGCAAACACCTT
GCCCACATCCTGCTCTCCCGGCAGCAGGGCCAGCGGCCTGTCACCTTGATCGGCTTCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAAGTGGAAGCGCTACCTCCTGATAGGCCTGGCCACCGTGGGAGGCGGGACAGTGAT
CGGCGTGACCGGGGGTCTGGCTGCCCCTCTTGTGGCTGCTGGAGCCGCGACAATCATTGG
CAGCGCCGGGGCAGCGGCTCTGGGCTCAGCGGCTGGCATCGCGGTCATGACCTCGCTGTT
CGGTGCAGCTGGAGCTGGCCTGACAGGCTACAAGATGAAGAAGCGCGTCGGGGCCATTGA
AGAGTTCACATTTCTGCCTCTGACGGAAGGCAGGCAGCTCCATATCACCATTGCCATCAC
GGGGTGGCTGGCATCCGGCAAATACCGCACCTTCAGCGCCCCGTGGGCTGCCCTGGCCCG
CAGCCGAGAGCAGTACTGCCTGGCCTGGGAGGCCAAGTACCTGATGGAGCTCGGCAATGC
CCTGGAGACCATCCTCAGTGGTCTTGCCAACATGGTGGCCCAGGAGGCCCTAAAGACACG
GTATTGTCCGGCATTGTGGCTGCCCTGACCTGGCCAGCCTCACTCCTATCTGGCGCCAGT
GACATTGACAACCCCTGGGGCGTGTGTCTCCATCGGTCAGCAGAGGTCGGCAAACACCTT
GCCCACATCCTGCTCTCCCGGCAGCAGGGCCAGCGGCCTGTCACCTTGATCGGCTTCAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61881553|ref|XP_614357.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61881553|ref|XP_614357.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               366-484, + strand, RNAz p=0.756799

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-484, + strand, RNAz p=0.756799

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               5' of AX775879, +
               

               
               3' of BC053600, +

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AX775879, +
               

               
               3' of BC053600, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               62-207, gnl|bosTau2|chr2 (61635976-61635831)
               

               
               62-207, gnl|Hg17|chr1 (19818399-19818254)
               

               
               62-207, gnl|Mm7|chr4 (138398486-138398631)
               


               
               327-518, gnl|bosTau2|chr2 (61630008-61629819)
               

               
               327-518, gnl|Hg17|chr1 (19812740-19812547)
               

               
               327-518, gnl|Mm7|chr4 (138400062-138400249)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-207, gnl|bosTau2|chr2 (61635976-61635831)
               

               
               62-207, gnl|Hg17|chr1 (19818399-19818254)
               

               
               62-207, gnl|Mm7|chr4 (138398486-138398631)
               


               
               327-518, gnl|bosTau2|chr2 (61630008-61629819)
               

               
               327-518, gnl|Hg17|chr1 (19812740-19812547)
               

               
               327-518, gnl|Mm7|chr4 (138400062-138400249)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               duo (0.172801)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	62-207, gnl\|bosTau2\|chr2 (61635976-61635831)
	62-207, gnl\|Hg17\|chr1 (19818399-19818254)
	62-207, gnl\|Mm7\|chr4 (138398486-138398631)

	327-518, gnl\|bosTau2\|chr2 (61630008-61629819)
	327-518, gnl\|Hg17\|chr1 (19812740-19812547)
	327-518, gnl\|Mm7\|chr4 (138400062-138400249)