Non-Coding RNA Search

Ss1.1-Pig2-17P09.3

Sequence:


               
               TAAGAACTTTTTTTTTGTAAATACATATCCATTGATGCCATATTTATCGTTTGTAATTTA
ATTATTGCTACAAGTGCCGGGAACTGAACAATATTTATGGATAAATGTTTTCTAACAAAT
TCTGTACAGCTTTTGATTATAACCGCTTTAGCATTAAATTTTATTGTTTTGAAAGAAGAA
CACAATTTACAATTTTTGAACCACTGACTCCTTTCTCTTGTTTTGTAACAGCCTCCTTCT
ACAAAGAGGAGACGTGAGCAAATGAAATCTTGTTTGTTGGTATTTATAACTCACTCAGAT
CCCTTTTTTAATTGTTAAATTATTTTTCTATTGCAGTATAGATTCCTTACAGTGTCAGTT
TCCATCTGGGAAGACCCTCCTTTCTTTATCTCTAGCTCAGATGGTTGTTTAACTACGAGT
TTAAATGTGTTTGTCCTGGATTTTCGGCATGCAAATCAAATATTACTGATCAATTCAGTT
AGTGGCCATGACATCTCAATCTTGTGCTTCAAAGACTGAGAAGCTGGATTTAATCATCCC
TGCCCTACATATATAAACATAAGGTAACCTAATGAGTTTTATGTCCCTTAGTTTTTTTAT
TATCTTACATAAAAATGAACATTGTGGCAGGATGCATGTCTGTCTGTCCTATTGAGAGAT
CACCCATATACCTATATATGTTTGTATCTATGACTTATCTAATCTGTCTATCAAATCTAT
CTAGCTTTCTATATATTTTCAAAAGTAAGCATACGTCTGAAACAGTGGTGATGAGTAAGG
CCAGTTGAGCCGTGCTTACTTATGATGAAAGTGCTTCTTAAAAGAACCATAGTCCATTTA
CAGTTTTGGAAGGCAAAGGATGGTTTGTTTTGCTGTATATAGTCCAATTCGTAATTATCA
CACTGATTCATAAAATTTTTATAGCGGTGTAATAACTGCAGCGGTTCTGAAATGATATTA
TGGAAAGAAAAAACATTTGCAAAATATGTATTTTTAAAGTTCATGGTTTGTAGGCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGAACTTTTTTTTTGTAAATACATATCCATTGATGCCATATTTATCGTTTGTAATTTA
ATTATTGCTACAAGTGCCGGGAACTGAACAATATTTATGGATAAATGTTTTCTAACAAAT
TCTGTACAGCTTTTGATTATAACCGCTTTAGCATTAAATTTTATTGTTTTGAAAGAAGAA
CACAATTTACAATTTTTGAACCACTGACTCCTTTCTCTTGTTTTGTAACAGCCTCCTTCT
ACAAAGAGGAGACGTGAGCAAATGAAATCTTGTTTGTTGGTATTTATAACTCACTCAGAT
CCCTTTTTTAATTGTTAAATTATTTTTCTATTGCAGTATAGATTCCTTACAGTGTCAGTT
TCCATCTGGGAAGACCCTCCTTTCTTTATCTCTAGCTCAGATGGTTGTTTAACTACGAGT
TTAAATGTGTTTGTCCTGGATTTTCGGCATGCAAATCAAATATTACTGATCAATTCAGTT
AGTGGCCATGACATCTCAATCTTGTGCTTCAAAGACTGAGAAGCTGGATTTAATCATCCC
TGCCCTACATATATAAACATAAGGTAACCTAATGAGTTTTATGTCCCTTAGTTTTTTTAT
TATCTTACATAAAAATGAACATTGTGGCAGGATGCATGTCTGTCTGTCCTATTGAGAGAT
CACCCATATACCTATATATGTTTGTATCTATGACTTATCTAATCTGTCTATCAAATCTAT
CTAGCTTTCTATATATTTTCAAAAGTAAGCATACGTCTGAAACAGTGGTGATGAGTAAGG
CCAGTTGAGCCGTGCTTACTTATGATGAAAGTGCTTCTTAAAAGAACCATAGTCCATTTA
CAGTTTTGGAAGGCAAAGGATGGTTTGTTTTGCTGTATATAGTCCAATTCGTAATTATCA
CACTGATTCATAAAATTTTTATAGCGGTGTAATAACTGCAGCGGTTCTGAAATGATATTA
TGGAAAGAAAAAACATTTGCAAAATATGTATTTTTAAAGTTCATGGTTTGTAGGCAAAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               234-353, - strand, RNAz p=0.689166
               

               
               473-576, - strand, RNAz p=0.927091

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-353, - strand, RNAz p=0.689166
               

               
               473-576, - strand, RNAz p=0.927091

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1020, gnl|bosTau2|chr22 (29368437-29369448)
               

               
               1-1020, gnl|Hg17|chrX (136378329-136379340)
               

               
               1-1020, gnl|Mm7|chrX (53515803-53516838)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1020, gnl|bosTau2|chr22 (29368437-29369448)
               

               
               1-1020, gnl|Hg17|chrX (136378329-136379340)
               

               
               1-1020, gnl|Mm7|chrX (53515803-53516838)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.257467)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)

	234-353, - strand, RNAz p=0.689166
	473-576, - strand, RNAz p=0.927091

	1-1020, gnl\|bosTau2\|chr22 (29368437-29369448)
	1-1020, gnl\|Hg17\|chrX (136378329-136379340)
	1-1020, gnl\|Mm7\|chrX (53515803-53516838)