Ss1.1-Pig2-19A22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGAAAGCCAGCGAGATGTTCGGTGCGAGCGACGAAGACGACACCGACTTCCTCTCGCCT AGCGGCGGTGCCAGATTGGCTTCTCTTTTTGGACCAGATCAGGCAGTTGCTGGCCATGGA AATGAGTTCTTCCAGTATACAGCCCCAAAGCAGCCTAAGAAAGGCCAGGGCACAGTATCA ACAGGAAATCAGGTGACACCAAAAACAGCACCCACCACAACAGGCACATCCACAGTATTG GTTGCAATAGCAGTCCATGCATATCGTTACACAAATGGTCAGTATGTAAAGCAGGGCAAA TTTGGTGCTGCAGTCCTGGGAAATCACACAGCCAGAGAGTATAGGATCCTTCTGTATATC AGTCAACAACAGCCAGTTACTGTTGCCAGAATTCATCTGAACTTTGAGCTAATGGTTCGG CCCAATAACTATAGCACCTTTTATGATGACCAGAGGCAAAACTGGTCCATCATGTTTGAG TCAGAAAAGGCTGCCGTGGAGTTCAATAAACAGGTATGCATTGCCAAGTGCAACAGCACC TCTTCCCTGGATTCAGTGCTGTCACAGGACCTTGTCGTAACAGAGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGAAAGCCAGCGAGATGTTCGGTGCGAGCGACGAAGACGACACCGACTTCCTCTCGCCT AGCGGCGGTGCCAGATTGGCTTCTCTTTTTGGACCAGATCAGGCAGTTGCTGGCCATGGA AATGAGTTCTTCCAGTATACAGCCCCAAAGCAGCCTAAGAAAGGCCAGGGCACAGTATCA ACAGGAAATCAGGTGACACCAAAAACAGCACCCACCACAACAGGCACATCCACAGTATTG GTTGCAATAGCAGTCCATGCATATCGTTACACAAATGGTCAGTATGTAAAGCAGGGCAAA TTTGGTGCTGCAGTCCTGGGAAATCACACAGCCAGAGAGTATAGGATCCTTCTGTATATC AGTCAACAACAGCCAGTTACTGTTGCCAGAATTCATCTGAACTTTGAGCTAATGGTTCGG CCCAATAACTATAGCACCTTTTATGATGACCAGAGGCAAAACTGGTCCATCATGTTTGAG TCAGAAAAGGCTGCCGTGGAGTTCAATAAACAGGTATGCATTGCCAAGTGCAACAGCACC TCTTCCCTGGATTCAGTGCTGTCACAGGACCTTGTCGTAACAGAGGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 414-516, + strand, RNAz p=0.885397 | |
| 417-516, - strand, RNAz p=0.98828 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 414-516, + strand, RNAz p=0.885397 | |
| 417-516, - strand, RNAz p=0.98828 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 68-188, gnl|bosTau2|chr8 (53050301-53050421) | |
| 68-188, gnl|canFam2|chr11 (70609389-70609519) | |
| 68-188, gnl|danRer3|chr8 (43171614-43171711) | |
| 68-188, gnl|dasNov1|scaffold_3117 (53175-53292) | |
| 68-188, gnl|fr1|chrUn (325067677-325067773) | |
| 68-188, gnl|hg17|chr9 (113053300-113053430) | |
| 68-188, gnl|Hg17|chr9 (113053427-113053307) | |
| 68-188, gnl|loxAfr1|scaffold_3830 (58744-58847) | |
| 68-188, gnl|mm7|chr4 (61786119-61786245) | |
| 68-188, gnl|Mm7|chr4 (61786242-61786125) | |
| 68-188, gnl|monDom2|scaffold_51 (1647339-1647214) | |
| 68-188, gnl|oryCun1|scaffold_204907 (53355-53485) | |
| 68-188, gnl|panTro1|chr11 (97587065-97587195) | |
| 68-188, gnl|rheMac2|chr15 (22903625-22903495) | |
| 68-188, gnl|rn3|chr5 (79349973-79350102) | |
| 68-188, gnl|tetNig1|chrUn_random (90991819-90991723) | |
| 414-516, gnl|bosTau2|chr8 (53060650-53060752) | |
| 414-516, gnl|canFam2|chr11 (70600525-70600665) | |
| 414-516, gnl|danRer3|chr8 (43168840-43168991) | |
| 414-516, gnl|dasNov1|scaffold_5548 (59973-60113) | |
| 414-516, gnl|echTel1|scaffold_104485 (5173-5041) | |
| 414-516, gnl|fr1|chrUn (312827079-312827223) | |
| 414-516, gnl|hg17|chr9 (113044341-113044481) | |
| 414-516, gnl|Hg17|chr9 (113044464-113044362) | |
| 414-516, gnl|loxAfr1|scaffold_3830 (49339-49476) | |
| 414-516, gnl|mm7|chr4 (61773905-61774049) | |
| 414-516, gnl|Mm7|chr4 (61774029-61773927) | |
| 414-516, gnl|monDom2|scaffold_51 (1654802-1654682) | |
| 414-516, gnl|oryCun1|scaffold_78807 (877-737) | |
| 414-516, gnl|panTro1|chr11 (97578028-97578168) | |
| 414-516, gnl|rheMac2|chr15 (22911917-22911782) | |
| 414-516, gnl|rn3|chr5 (79338292-79338436) | |
| 414-516, gnl|tetNig1|chrUn_random (90992905-90992771) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-188, gnl|bosTau2|chr8 (53050301-53050421) | |
| 68-188, gnl|canFam2|chr11 (70609389-70609519) | |
| 68-188, gnl|danRer3|chr8 (43171614-43171711) | |
| 68-188, gnl|dasNov1|scaffold_3117 (53175-53292) | |
| 68-188, gnl|fr1|chrUn (325067677-325067773) | |
| 68-188, gnl|hg17|chr9 (113053300-113053430) | |
| 68-188, gnl|Hg17|chr9 (113053427-113053307) | |
| 68-188, gnl|loxAfr1|scaffold_3830 (58744-58847) | |
| 68-188, gnl|mm7|chr4 (61786119-61786245) | |
| 68-188, gnl|Mm7|chr4 (61786242-61786125) | |
| 68-188, gnl|monDom2|scaffold_51 (1647339-1647214) | |
| 68-188, gnl|oryCun1|scaffold_204907 (53355-53485) | |
| 68-188, gnl|panTro1|chr11 (97587065-97587195) | |
| 68-188, gnl|rheMac2|chr15 (22903625-22903495) | |
| 68-188, gnl|rn3|chr5 (79349973-79350102) | |
| 68-188, gnl|tetNig1|chrUn_random (90991819-90991723) | |
| 414-516, gnl|bosTau2|chr8 (53060650-53060752) | |
| 414-516, gnl|canFam2|chr11 (70600525-70600665) | |
| 414-516, gnl|danRer3|chr8 (43168840-43168991) | |
| 414-516, gnl|dasNov1|scaffold_5548 (59973-60113) | |
| 414-516, gnl|echTel1|scaffold_104485 (5173-5041) | |
| 414-516, gnl|fr1|chrUn (312827079-312827223) | |
| 414-516, gnl|hg17|chr9 (113044341-113044481) | |
| 414-516, gnl|Hg17|chr9 (113044464-113044362) | |
| 414-516, gnl|loxAfr1|scaffold_3830 (49339-49476) | |
| 414-516, gnl|mm7|chr4 (61773905-61774049) | |
| 414-516, gnl|Mm7|chr4 (61774029-61773927) | |
| 414-516, gnl|monDom2|scaffold_51 (1654802-1654682) | |
| 414-516, gnl|oryCun1|scaffold_78807 (877-737) | |
| 414-516, gnl|panTro1|chr11 (97578028-97578168) | |
| 414-516, gnl|rheMac2|chr15 (22911917-22911782) | |
| 414-516, gnl|rn3|chr5 (79338292-79338436) | |
| 414-516, gnl|tetNig1|chrUn_random (90992905-90992771) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |