Non-Coding RNA Search

Ss1.1-Pig2-19O18.5

Sequence:


               
               GATGTGGAGAAGCCAGGCAGTATTCAGCACAACCCTGGGGAGAGACCCTTCCCTCAGGCC
TCCCCTGCCAACCTCTGGGCTTGTCACTGGAAAGATTAAAAGGAAACCGACAACACCCAG
CAGCAACAAAAACTAGTCCTCGTAGAGTTTCTTGCGCTTTGATTTTTTTAGGGCTTGAGC
CCTGTTTCACTCATAGGGTCTAGAATAATTGTGTCGAGTAAAAAGGAGATACCCCAATAT
TCAAAGCTGCTAAATGTTCTCTTTGCCATAAAGACTCCGTGTAACCGTGTGAACACACTT
GGGATTTTTCTCCTCTGTCCCGAGGTCTCCGTCTGCTTTTTTTTTTTGGGTTTCTTTCTA
GGAGAATGAGATGTGCATGTAAGGGGGGAGGAGGCTACCCCTCCCCCAGGCTCTTGGCCA
CGGGCAGCTTCTCCGCACCCTCAGTTTAGCAAGGGCTCCTGGAGGACCGCCTGGGGGAGG
CAGAAAGGGGAGCACCAGGGTGGCTCCAATGTCTTTATTTTTAACTGTTGCCACTGCTGC
CCCCGCCCCTTCCTGGGCCTGGAGCACTGTCGGCCCCAGACTAGCAGGAGTGAGTTGGAA
GGGGGAGAAGCACGGATTCTCCTCCCCACTTGCGGGGGGCATTCTAACTGTGCAGTAGGG
ATAGAAGGCACGAGCCTGGGAAGTGCTTTTATAAATTATTTTCCTTGTAGATTTTATTTT
TAATTTATCTCTGTGACCTGCCAGGGAGAGGGGGGAGAGAGAGAGAGAGAGAGAGAAAGA
GAGAGAGATGCTGTGAGCACATGACAAAATAAAATAAAATAAAATGGATGATTCATTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTGGAGAAGCCAGGCAGTATTCAGCACAACCCTGGGGAGAGACCCTTCCCTCAGGCC
TCCCCTGCCAACCTCTGGGCTTGTCACTGGAAAGATTAAAAGGAAACCGACAACACCCAG
CAGCAACAAAAACTAGTCCTCGTAGAGTTTCTTGCGCTTTGATTTTTTTAGGGCTTGAGC
CCTGTTTCACTCATAGGGTCTAGAATAATTGTGTCGAGTAAAAAGGAGATACCCCAATAT
TCAAAGCTGCTAAATGTTCTCTTTGCCATAAAGACTCCGTGTAACCGTGTGAACACACTT
GGGATTTTTCTCCTCTGTCCCGAGGTCTCCGTCTGCTTTTTTTTTTTGGGTTTCTTTCTA
GGAGAATGAGATGTGCATGTAAGGGGGGAGGAGGCTACCCCTCCCCCAGGCTCTTGGCCA
CGGGCAGCTTCTCCGCACCCTCAGTTTAGCAAGGGCTCCTGGAGGACCGCCTGGGGGAGG
CAGAAAGGGGAGCACCAGGGTGGCTCCAATGTCTTTATTTTTAACTGTTGCCACTGCTGC
CCCCGCCCCTTCCTGGGCCTGGAGCACTGTCGGCCCCAGACTAGCAGGAGTGAGTTGGAA
GGGGGAGAAGCACGGATTCTCCTCCCCACTTGCGGGGGGCATTCTAACTGTGCAGTAGGG
ATAGAAGGCACGAGCCTGGGAAGTGCTTTTATAAATTATTTTCCTTGTAGATTTTATTTT
TAATTTATCTCTGTGACCTGCCAGGGAGAGGGGGGAGAGAGAGAGAGAGAGAGAGAAAGA
GAGAGAGATGCTGTGAGCACATGACAAAATAAAATAAAATAAAATGGATGATTCATTAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               26-260, - strand, RNAz p=0.977652
               

               
               535-635, - strand, RNAz p=0.921145

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-260, - strand, RNAz p=0.977652
               

               
               535-635, - strand, RNAz p=0.921145

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               599-737, - strand, RNAmicro p=0.993804
               

               
               160-298, - strand, RNAmicro p=0.985573

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               599-737, - strand, RNAmicro p=0.993804
               

               
               160-298, - strand, RNAmicro p=0.985573

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-770, gnl|bosTau2|chr19 (31091688-31090920)
               

               
               1-770, gnl|Hg17|chr17 (43493013-43493798)
               

               
               1-770, gnl|Mm7|chr11 (96927340-96926510)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-770, gnl|bosTau2|chr19 (31091688-31090920)
               

               
               1-770, gnl|Hg17|chr17 (43493013-43493798)
               

               
               1-770, gnl|Mm7|chr11 (96927340-96926510)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               amn (0.417711)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

	26-260, - strand, RNAz p=0.977652
	535-635, - strand, RNAz p=0.921145

	599-737, - strand, RNAmicro p=0.993804
	160-298, - strand, RNAmicro p=0.985573

	1-770, gnl\|bosTau2\|chr19 (31091688-31090920)
	1-770, gnl\|Hg17\|chr17 (43493013-43493798)
	1-770, gnl\|Mm7\|chr11 (96927340-96926510)

	amn (0.417711)
	cst (0.280073)
	hlv (0.278513)
	cov (0.264306)
	ece (0.229305)
	nms (0.213858)
	fcc (0.197785)
	col (0.195008)
	fty (0.17584)
	ton (0.1755)
	nje (0.16592)
	che (0.136314)
	ste (0.135208)
	eep (0.122564)
	cly (0.120642)
	nbm (0.0993246)