Non-Coding RNA Search

Ss1.1-Pig2-21M14.5

Sequence:


               
               CCCTCCTCCTCTTTCTCATCATCTGCTTCAGCAAGTCGTACACGCTTTTGGTCCTTTAGA
CCTTGAGGTTCTCTGACTCCTGCTAGGTCCTCTGGATCCAGGTCACTATCCAGAGATGCA
CTGTCGTCGTCGTCCTCCTCAGCGTCTGATATGTAGATGTCATCACTTGGCAGGTCAGAC
AGAAACGTGTCTGCAGCACTCATGTCCCCTTGCGTCACCTCCTCTAACAACTGGTGACCC
CGGATGGTGCGCAGGGAGAACATGCCAGTCTCCCCCTCATCGGCGATGGAAACTCCAGGA
AGATCCATCTTCAGCTCCACACGCTCCCGCTGCTTCCTCTGCTCGCGCAGCAGCTTCTTT
TTCTTCCTCTTTAACTCCGCCACCTCCTGGGCCTTCATCTCTGCCAGGGTCCGGTTGAGA
TGCTCCTCCTCCTCCTCCTCCTTAGAGGGCTGCTGCGAGGCCCGGGCCGCCTGCTCCTCC
TCCTCCCCTTCCTCTTCCTCCCCTGAGCTGAGGCTGATGTCCATTGCCTTTGCTTGTTCT
TTCAGCTTCTTGGCCACATGTCGCCGAAGCTTCGTCCTCCAGTTCAGTAGGGATTTAAGC
TCCTTGCGGCCCAGCACTCTGATATCCTGACAGCATGCCCGTACATCCTCGGTGGTGGCT
GGATGCCGTGCCAACTCTTCATCATCTATTGCAATTTCGCTGGCTTTGGAGAGAAAGTCG
ACAGGGTTGGCAGCTCGGAGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTCCTCTTTCTCATCATCTGCTTCAGCAAGTCGTACACGCTTTTGGTCCTTTAGA
CCTTGAGGTTCTCTGACTCCTGCTAGGTCCTCTGGATCCAGGTCACTATCCAGAGATGCA
CTGTCGTCGTCGTCCTCCTCAGCGTCTGATATGTAGATGTCATCACTTGGCAGGTCAGAC
AGAAACGTGTCTGCAGCACTCATGTCCCCTTGCGTCACCTCCTCTAACAACTGGTGACCC
CGGATGGTGCGCAGGGAGAACATGCCAGTCTCCCCCTCATCGGCGATGGAAACTCCAGGA
AGATCCATCTTCAGCTCCACACGCTCCCGCTGCTTCCTCTGCTCGCGCAGCAGCTTCTTT
TTCTTCCTCTTTAACTCCGCCACCTCCTGGGCCTTCATCTCTGCCAGGGTCCGGTTGAGA
TGCTCCTCCTCCTCCTCCTCCTTAGAGGGCTGCTGCGAGGCCCGGGCCGCCTGCTCCTCC
TCCTCCCCTTCCTCTTCCTCCCCTGAGCTGAGGCTGATGTCCATTGCCTTTGCTTGTTCT
TTCAGCTTCTTGGCCACATGTCGCCGAAGCTTCGTCCTCCAGTTCAGTAGGGATTTAAGC
TCCTTGCGGCCCAGCACTCTGATATCCTGACAGCATGCCCGTACATCCTCGGTGGTGGCT
GGATGCCGTGCCAACTCTTCATCATCTATTGCAATTTCGCTGGCTTTGGAGAGAAAGTCG
ACAGGGTTGGCAGCTCGGAGGAAG

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               45-233, gnl|bosTau2|chr19 (40495650-40495832)
               

               
               45-233, gnl|canFam2|chr9 (14902584-14902803)
               

               
               45-233, gnl|danRer3|chr2 (11365997-11366208)
               

               
               45-233, gnl|dasNov1|scaffold_21495 (14623-14805)
               

               
               45-233, gnl|echTel1|scaffold_313474 (60319-60090)
               

               
               45-233, gnl|galGal2|chr27 (203529-203774)
               

               
               45-233, gnl|hg17|chr17 (59253072-59253296)
               

               
               45-233, gnl|Hg17|chr17 (59253078-59253263)
               

               
               45-233, gnl|loxAfr1|scaffold_4277 (58347-58122)
               

               
               45-233, gnl|mm7|chr11 (106360191-106360398)
               

               
               45-233, gnl|Mm7|chr11 (106360197-106360378)
               

               
               45-233, gnl|monDom2|scaffold_18 (35684777-35684554)
               

               
               45-233, gnl|oryCun1|scaffold_178927 (53599-53782)
               

               
               45-233, gnl|panTro1|chr19 (45883278-45883054)
               

               
               45-233, gnl|rheMac2|chr16 (59335814-59336038)
               

               
               45-233, gnl|rn3|chr10 (95660512-95660730)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-233, gnl|bosTau2|chr19 (40495650-40495832)
               

               
               45-233, gnl|canFam2|chr9 (14902584-14902803)
               

               
               45-233, gnl|danRer3|chr2 (11365997-11366208)
               

               
               45-233, gnl|dasNov1|scaffold_21495 (14623-14805)
               

               
               45-233, gnl|echTel1|scaffold_313474 (60319-60090)
               

               
               45-233, gnl|galGal2|chr27 (203529-203774)
               

               
               45-233, gnl|hg17|chr17 (59253072-59253296)
               

               
               45-233, gnl|Hg17|chr17 (59253078-59253263)
               

               
               45-233, gnl|loxAfr1|scaffold_4277 (58347-58122)
               

               
               45-233, gnl|mm7|chr11 (106360191-106360398)
               

               
               45-233, gnl|Mm7|chr11 (106360197-106360378)
               

               
               45-233, gnl|monDom2|scaffold_18 (35684777-35684554)
               

               
               45-233, gnl|oryCun1|scaffold_178927 (53599-53782)
               

               
               45-233, gnl|panTro1|chr19 (45883278-45883054)
               

               
               45-233, gnl|rheMac2|chr16 (59335814-59336038)
               

               
               45-233, gnl|rn3|chr10 (95660512-95660730)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cly (0.120642)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	45-233, gnl\|bosTau2\|chr19 (40495650-40495832)
	45-233, gnl\|canFam2\|chr9 (14902584-14902803)
	45-233, gnl\|danRer3\|chr2 (11365997-11366208)
	45-233, gnl\|dasNov1\|scaffold_21495 (14623-14805)
	45-233, gnl\|echTel1\|scaffold_313474 (60319-60090)
	45-233, gnl\|galGal2\|chr27 (203529-203774)
	45-233, gnl\|hg17\|chr17 (59253072-59253296)
	45-233, gnl\|Hg17\|chr17 (59253078-59253263)
	45-233, gnl\|loxAfr1\|scaffold_4277 (58347-58122)
	45-233, gnl\|mm7\|chr11 (106360191-106360398)
	45-233, gnl\|Mm7\|chr11 (106360197-106360378)
	45-233, gnl\|monDom2\|scaffold_18 (35684777-35684554)
	45-233, gnl\|oryCun1\|scaffold_178927 (53599-53782)
	45-233, gnl\|panTro1\|chr19 (45883278-45883054)
	45-233, gnl\|rheMac2\|chr16 (59335814-59336038)
	45-233, gnl\|rn3\|chr10 (95660512-95660730)