Ss1.1-Pig2-23B14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAAAGCCGACCTCGAAAAGGAAGAGAAGAAAAGAGATTACCAAGCCCGAAAGACGCAT TACCTCCTCAGCACAAAGCAGATTCCAGGAGTATACAACTCACCATTCAGAAAGGAGCCT GACCCACGGGAGCTGAGGTTACAGAAGGCGAAGCCTTTAACGCACCCAAGACCTAAAGTG ACACCCAAGCGCTCTGCCAGCCTTCGAAACTGGCTCGAGTGCACCAGGGCCCGGTCCTTT CCTCGATCTGCGGTTCTGCCACCCATCGACAGGAAACCGTGTCAGGGACCCTTCCGTGAC ATCGCGGAAGTCTTGGCGCAGCGCTACAAGCCCCTGGAGCCGACGCTGCGGGTGGCAGAA CCCATTGATGGTCCCAAGGAGGCCAGAGCCGAGCTCCAGAGGCAGGAATGGACGCGAAAT GTGCAGGACAATCTGTTTTTGCCGTTTTCTTCCTACCATAAAAGTAAAAAGCACATCCCG GCAATGCATTTATCAAGCAAGTATGGTCCTGATTCTTACGGAAGCCGACATTTCCGAGAA AAAAATCCTGAGAGATGGATCTGTGACAAGGATTTCCAAACTGTGTTACCATCATTTGAT CTCTTCTCCGAGTATGGAAAATTATATTCAAAAGCTGGACAAATTGTATAAAGGGTGAAG TTGGTTTTGTGGCTGTCTTGCCACCTTTTTCTCCTTCTGGGCTGTCAGACTTCTAAGGAG ACCTGGAGGGAGAAAGCTTGAAGAACTTGTTAGTCCACAGCTGCCTCCCTGTCGAGGATG GTGGGTTTGATTAAAGGGGAGCGCCCCCCTGGATTTCACAGTTCACATCAATCACGCTGA TCAGCCCCCGAAAGGCAACATATTGTCTGGGACTCGGCCAAGGAGGGTTATCAATTTCAC AATTGCACTTATGTCTTTCAGCCAAGAACTAGTTTATTTTTGGCTACTGGAGTCTGAGAG GCTTTGGAGCTGCGTTTACACTTTCCAGCTTTACACCAGCCTCTCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAAAGCCGACCTCGAAAAGGAAGAGAAGAAAAGAGATTACCAAGCCCGAAAGACGCAT TACCTCCTCAGCACAAAGCAGATTCCAGGAGTATACAACTCACCATTCAGAAAGGAGCCT GACCCACGGGAGCTGAGGTTACAGAAGGCGAAGCCTTTAACGCACCCAAGACCTAAAGTG ACACCCAAGCGCTCTGCCAGCCTTCGAAACTGGCTCGAGTGCACCAGGGCCCGGTCCTTT CCTCGATCTGCGGTTCTGCCACCCATCGACAGGAAACCGTGTCAGGGACCCTTCCGTGAC ATCGCGGAAGTCTTGGCGCAGCGCTACAAGCCCCTGGAGCCGACGCTGCGGGTGGCAGAA CCCATTGATGGTCCCAAGGAGGCCAGAGCCGAGCTCCAGAGGCAGGAATGGACGCGAAAT GTGCAGGACAATCTGTTTTTGCCGTTTTCTTCCTACCATAAAAGTAAAAAGCACATCCCG GCAATGCATTTATCAAGCAAGTATGGTCCTGATTCTTACGGAAGCCGACATTTCCGAGAA AAAAATCCTGAGAGATGGATCTGTGACAAGGATTTCCAAACTGTGTTACCATCATTTGAT CTCTTCTCCGAGTATGGAAAATTATATTCAAAAGCTGGACAAATTGTATAAAGGGTGAAG TTGGTTTTGTGGCTGTCTTGCCACCTTTTTCTCCTTCTGGGCTGTCAGACTTCTAAGGAG ACCTGGAGGGAGAAAGCTTGAAGAACTTGTTAGTCCACAGCTGCCTCCCTGTCGAGGATG GTGGGTTTGATTAAAGGGGAGCGCCCCCCTGGATTTCACAGTTCACATCAATCACGCTGA TCAGCCCCCGAAAGGCAACATATTGTCTGGGACTCGGCCAAGGAGGGTTATCAATTTCAC AATTGCACTTATGTCTTTCAGCCAAGAACTAGTTTATTTTTGGCTACTGGAGTCTGAGAG GCTTTGGAGCTGCGTTTACACTTTCCAGCTTTACACCAGCCTCTCAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 652-743, + strand, RNAz p=0.784398 | |
| 893-1008, - strand, RNAz p=0.970125 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 652-743, + strand, RNAz p=0.784398 | |
| 893-1008, - strand, RNAz p=0.970125 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 80-289, gnl|bosTau2|chr16 (9368871-9369080) | |
| 80-289, gnl|canFam2|chr38 (15947426-15947663) | |
| 80-289, gnl|canFam2|chr38 (15947631-15947457) | |
| 80-289, gnl|danRer3|chrNA (45995568-45995313) | |
| 80-289, gnl|dasNov1|scaffold_52096 (2267-2013) | |
| 80-289, gnl|dasNov1|scaffold_52096 (2062-2236) | |
| 80-289, gnl|echTel1|scaffold_141549 (580-414) | |
| 80-289, gnl|echTel1|scaffold_301883 (58848-58587) | |
| 80-289, gnl|galGal2|chr3 (16023931-16023691) | |
| 80-289, gnl|hg17|chr1 (214336068-214336328) | |
| 80-289, gnl|Hg17|chr1 (214336069-214336278) | |
| 80-289, gnl|hg17|chr6 (42063032-42063199) | |
| 80-289, gnl|loxAfr1|scaffold_1685 (44579-44317) | |
| 80-289, gnl|loxAfr1|scaffold_1685 (44373-44540) | |
| 80-289, gnl|mm7|chr1 (186642876-186642613) | |
| 80-289, gnl|mm7|chr1 (186642671-186642842) | |
| 80-289, gnl|Mm7|chr1 (186642873-186642661) | |
| 80-289, gnl|monDom2|scaffold_13 (23345034-23345303) | |
| 80-289, gnl|panTro1|chr1 (198056358-198056618) | |
| 80-289, gnl|panTro1|chr5 (42633631-42633798) | |
| 80-289, gnl|rheMac2|chr1 (152658600-152658338) | |
| 80-289, gnl|rheMac2|chr1 (152658395-152658569) | |
| 80-289, gnl|rn3|chr13 (103422844-103422581) | |
| 80-289, gnl|rn3|chr13 (103422636-103422810) | |
| 80-289, gnl|xenTro1|scaffold_39 (1486716-1486949) | |
| 435-571, gnl|bosTau2|chr16 (9400324-9400460) | |
| 435-571, gnl|Hg17|chr1 (214363455-214363588) | |
| 435-571, gnl|Mm7|chr1 (186623314-186623178) | |
| 652-1008, gnl|bosTau2|chr16 (9583181-9583547) | |
| 652-1008, gnl|canFam2|chr38 (16159198-16159633) | |
| 652-1008, gnl|danRer3|chr17 (34034089-34033669) | |
| 652-1008, gnl|dasNov1|scaffold_16216 (39769-39324) | |
| 652-1008, gnl|echTel1|scaffold_324624 (50521-50093) | |
| 652-1008, gnl|galGal2|chr3 (15914764-15914372) | |
| 652-1008, gnl|hg17|chr1 (214593404-214593848) | |
| 652-1008, gnl|Hg17|chr1 (214593570-214593929) | |
| 652-1008, gnl|loxAfr1|scaffold_48 (204266-203831) | |
| 652-1008, gnl|mm7|chr1 (186451418-186450976) | |
| 652-1008, gnl|Mm7|chr1 (186451246-186450893) | |
| 652-1008, gnl|monDom2|scaffold_13 (23728028-23728447) | |
| 652-1008, gnl|oryCun1|scaffold_182958 (47878-47459) | |
| 652-1008, gnl|panTro1|chr1 (198328824-198329256) | |
| 652-1008, gnl|rheMac2|chr1 (152398570-152398129) | |
| 652-1008, gnl|rn3|chr13 (103227898-103227421) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 80-289, gnl|bosTau2|chr16 (9368871-9369080) | |
| 80-289, gnl|canFam2|chr38 (15947426-15947663) | |
| 80-289, gnl|canFam2|chr38 (15947631-15947457) | |
| 80-289, gnl|danRer3|chrNA (45995568-45995313) | |
| 80-289, gnl|dasNov1|scaffold_52096 (2267-2013) | |
| 80-289, gnl|dasNov1|scaffold_52096 (2062-2236) | |
| 80-289, gnl|echTel1|scaffold_141549 (580-414) | |
| 80-289, gnl|echTel1|scaffold_301883 (58848-58587) | |
| 80-289, gnl|galGal2|chr3 (16023931-16023691) | |
| 80-289, gnl|hg17|chr1 (214336068-214336328) | |
| 80-289, gnl|Hg17|chr1 (214336069-214336278) | |
| 80-289, gnl|hg17|chr6 (42063032-42063199) | |
| 80-289, gnl|loxAfr1|scaffold_1685 (44579-44317) | |
| 80-289, gnl|loxAfr1|scaffold_1685 (44373-44540) | |
| 80-289, gnl|mm7|chr1 (186642876-186642613) | |
| 80-289, gnl|mm7|chr1 (186642671-186642842) | |
| 80-289, gnl|Mm7|chr1 (186642873-186642661) | |
| 80-289, gnl|monDom2|scaffold_13 (23345034-23345303) | |
| 80-289, gnl|panTro1|chr1 (198056358-198056618) | |
| 80-289, gnl|panTro1|chr5 (42633631-42633798) | |
| 80-289, gnl|rheMac2|chr1 (152658600-152658338) | |
| 80-289, gnl|rheMac2|chr1 (152658395-152658569) | |
| 80-289, gnl|rn3|chr13 (103422844-103422581) | |
| 80-289, gnl|rn3|chr13 (103422636-103422810) | |
| 80-289, gnl|xenTro1|scaffold_39 (1486716-1486949) | |
| 435-571, gnl|bosTau2|chr16 (9400324-9400460) | |
| 435-571, gnl|Hg17|chr1 (214363455-214363588) | |
| 435-571, gnl|Mm7|chr1 (186623314-186623178) | |
| 652-1008, gnl|bosTau2|chr16 (9583181-9583547) | |
| 652-1008, gnl|canFam2|chr38 (16159198-16159633) | |
| 652-1008, gnl|danRer3|chr17 (34034089-34033669) | |
| 652-1008, gnl|dasNov1|scaffold_16216 (39769-39324) | |
| 652-1008, gnl|echTel1|scaffold_324624 (50521-50093) | |
| 652-1008, gnl|galGal2|chr3 (15914764-15914372) | |
| 652-1008, gnl|hg17|chr1 (214593404-214593848) | |
| 652-1008, gnl|Hg17|chr1 (214593570-214593929) | |
| 652-1008, gnl|loxAfr1|scaffold_48 (204266-203831) | |
| 652-1008, gnl|mm7|chr1 (186451418-186450976) | |
| 652-1008, gnl|Mm7|chr1 (186451246-186450893) | |
| 652-1008, gnl|monDom2|scaffold_13 (23728028-23728447) | |
| 652-1008, gnl|oryCun1|scaffold_182958 (47878-47459) | |
| 652-1008, gnl|panTro1|chr1 (198328824-198329256) | |
| 652-1008, gnl|rheMac2|chr1 (152398570-152398129) | |
| 652-1008, gnl|rn3|chr13 (103227898-103227421) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |