Ss1.1-Pig2-23B20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCTCTCATTGCCCAAGGGGTCCGGTGCTCAGACTGTGGGTTGAACGTACACAAA CAGTGTTCCAAGCACGTTCCCAACGACTGCCAGCCTGATCTCAAGAGGATCAAGAAGGTG TACTGCTGTGACCTCACGACACTGGTGAAGGCTCACAACACGCAGAGACCCATGGTGGTA GACATATGCATTCGGGAAATTGAAGCAAGAGGATTAAAAATCAGAAGGCCTTTATAGAGT CTCTGGATTCACTGAACACATCGAAGATGTCAAAATGGCATTTGACAGAGACGGTGAAAA GGCAGATATATCTGCCAGCATCTATCCAGACATAAACATCATCACTGGAGCCCTTAAACT GTACTTCAGAGACTTACCCATTCCTGTCATCACCTATGATACCTATTCTAAATTTATAGA AGCAGCAAAAATCTCCAATGTGGATGAGAGGCTGGAAGCAGTCCATGAGGTGCTGATGCT GCTGCCACCTGCCCACTATGAGACCCTCCGCTACCTAATGATCCACCTCAAGAAGGTGAC TCTGAATGAAAAGGACAATTTCATGAATGCTGAAAACCTGGGGATCGTGTTCGGGCCCAC CTTGATGAGGCCCCCCGAGGACAGCACCCTCACCACCCTCCACGACATGCGGTACCAAAA GCTAATTGTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCTCTCATTGCCCAAGGGGTCCGGTGCTCAGACTGTGGGTTGAACGTACACAAA CAGTGTTCCAAGCACGTTCCCAACGACTGCCAGCCTGATCTCAAGAGGATCAAGAAGGTG TACTGCTGTGACCTCACGACACTGGTGAAGGCTCACAACACGCAGAGACCCATGGTGGTA GACATATGCATTCGGGAAATTGAAGCAAGAGGATTAAAAATCAGAAGGCCTTTATAGAGT CTCTGGATTCACTGAACACATCGAAGATGTCAAAATGGCATTTGACAGAGACGGTGAAAA GGCAGATATATCTGCCAGCATCTATCCAGACATAAACATCATCACTGGAGCCCTTAAACT GTACTTCAGAGACTTACCCATTCCTGTCATCACCTATGATACCTATTCTAAATTTATAGA AGCAGCAAAAATCTCCAATGTGGATGAGAGGCTGGAAGCAGTCCATGAGGTGCTGATGCT GCTGCCACCTGCCCACTATGAGACCCTCCGCTACCTAATGATCCACCTCAAGAAGGTGAC TCTGAATGAAAAGGACAATTTCATGAATGCTGAAAACCTGGGGATCGTGTTCGGGCCCAC CTTGATGAGGCCCCCCGAGGACAGCACCCTCACCACCCTCCACGACATGCGGTACCAAAA GCTAATTGTGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 289-407, + strand, RNAz p=0.975507 | |
| 289-407, - strand, RNAz p=0.975507 | |
| 289-397, + strand, RNAz p=0.701014 | |
| 289-397, - strand, RNAz p=0.701014 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 289-407, + strand, RNAz p=0.975507 | |
| 289-407, - strand, RNAz p=0.975507 | |
| 289-397, + strand, RNAz p=0.701014 | |
| 289-397, - strand, RNAz p=0.701014 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 35-240, gnl|bosTau2|chr4 (37678720-37678923) | |
| 35-240, gnl|canFam2|chr14 (45454572-45454753) | |
| 35-240, gnl|danRer3|chr16 (12003660-12003479) | |
| 35-240, gnl|dasNov1|scaffold_10942 (20439-20620) | |
| 35-240, gnl|echTel1|scaffold_235304 (5397-5578) | |
| 35-240, gnl|fr1|chrUn (103550286-103550118) | |
| 35-240, gnl|galGal2|chr2 (32922102-32922283) | |
| 35-240, gnl|hg17|chr7 (29312718-29312899) | |
| 35-240, gnl|Hg17|chr7 (29312720-29312930) | |
| 35-240, gnl|loxAfr1|scaffold_5341 (54539-54720) | |
| 35-240, gnl|mm7|chr6 (54253632-54253813) | |
| 35-240, gnl|Mm7|chr6 (54253634-54253851) | |
| 35-240, gnl|monDom2|scaffold_7 (90665431-90665250) | |
| 35-240, gnl|oryCun1|scaffold_175470 (67495-67314) | |
| 35-240, gnl|panTro1|chr6 (30467731-30467912) | |
| 35-240, gnl|rheMac2|chr3 (96705234-96705053) | |
| 35-240, gnl|rn3|chr4 (82953704-82953885) | |
| 35-240, gnl|tetNig1|chr8 (6531102-6530925) | |
| 35-240, gnl|xenTro1|scaffold_29 (3172991-3173172) | |
| 36-198, gnl|bosTau2|chr14 (10384759-10384920) | |
| 36-198, gnl|Hg17|chr2 (175502719-175502558) | |
| 36-198, gnl|Mm7|chr2 (73468768-73468607) | |
| 289-428, gnl|bosTau2|chr4 (37686300-37686439) | |
| 289-428, gnl|canFam2|chr14 (45461830-45462013) | |
| 289-428, gnl|danRer3|chr16 (12000382-12000197) | |
| 289-428, gnl|dasNov1|scaffold_1960 (3792-3975) | |
| 289-428, gnl|echTel1|scaffold_284415 (133575-133723) | |
| 289-428, gnl|fr1|chrUn (103549786-103549634) | |
| 289-428, gnl|galGal2|chr2 (32930848-32931031) | |
| 289-428, gnl|hg17|chr7 (29320074-29320257) | |
| 289-428, gnl|Hg17|chr7 (29320082-29320221) | |
| 289-428, gnl|loxAfr1|scaffold_5341 (61253-61436) | |
| 289-428, gnl|mm7|chr6 (54259144-54259314) | |
| 289-428, gnl|Mm7|chr6 (54259152-54259291) | |
| 289-428, gnl|monDom2|scaffold_7 (90660872-90660715) | |
| 289-428, gnl|oryCun1|scaffold_175470 (61362-61179) | |
| 289-428, gnl|panTro1|chr6 (30474981-30475164) | |
| 289-428, gnl|rheMac2|chr3 (96697483-96697300) | |
| 289-428, gnl|rn3|chr4 (82959208-82959378) | |
| 289-428, gnl|tetNig1|chr8 (6530678-6530527) | |
| 289-428, gnl|xenTro1|scaffold_29 (3177590-3177751) | |
| 535-672, gnl|bosTau2|chr4 (37694856-37694993) | |
| 535-672, gnl|canFam2|chr14 (45467208-45467415) | |
| 535-672, gnl|danRer3|chr16 (11994019-11993820) | |
| 535-672, gnl|dasNov1|scaffold_15098 (5080-4873) | |
| 535-672, gnl|echTel1|scaffold_235304 (18217-18424) | |
| 535-672, gnl|fr1|chrUn (103549394-103549208) | |
| 535-672, gnl|galGal2|chr2 (32935357-32935553) | |
| 535-672, gnl|hg17|chr7 (29325407-29325614) | |
| 535-672, gnl|Hg17|chr7 (29325420-29325557) | |
| 535-672, gnl|loxAfr1|scaffold_5341 (65461-65666) | |
| 535-672, gnl|mm7|chr6 (54263430-54263633) | |
| 535-672, gnl|Mm7|chr6 (54263443-54263580) | |
| 535-672, gnl|monDom2|scaffold_7 (90655428-90655233) | |
| 535-672, gnl|oryCun1|scaffold_175470 (56895-56682) | |
| 535-672, gnl|panTro1|chr6 (30481239-30481451) | |
| 535-672, gnl|rheMac2|chr3 (96692120-96691913) | |
| 535-672, gnl|rn3|chr4 (82962901-82963104) | |
| 535-672, gnl|tetNig1|chr8 (6530279-6530123) | |
| 535-672, gnl|xenTro1|scaffold_29 (3181928-3182116) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-240, gnl|bosTau2|chr4 (37678720-37678923) | |
| 35-240, gnl|canFam2|chr14 (45454572-45454753) | |
| 35-240, gnl|danRer3|chr16 (12003660-12003479) | |
| 35-240, gnl|dasNov1|scaffold_10942 (20439-20620) | |
| 35-240, gnl|echTel1|scaffold_235304 (5397-5578) | |
| 35-240, gnl|fr1|chrUn (103550286-103550118) | |
| 35-240, gnl|galGal2|chr2 (32922102-32922283) | |
| 35-240, gnl|hg17|chr7 (29312718-29312899) | |
| 35-240, gnl|Hg17|chr7 (29312720-29312930) | |
| 35-240, gnl|loxAfr1|scaffold_5341 (54539-54720) | |
| 35-240, gnl|mm7|chr6 (54253632-54253813) | |
| 35-240, gnl|Mm7|chr6 (54253634-54253851) | |
| 35-240, gnl|monDom2|scaffold_7 (90665431-90665250) | |
| 35-240, gnl|oryCun1|scaffold_175470 (67495-67314) | |
| 35-240, gnl|panTro1|chr6 (30467731-30467912) | |
| 35-240, gnl|rheMac2|chr3 (96705234-96705053) | |
| 35-240, gnl|rn3|chr4 (82953704-82953885) | |
| 35-240, gnl|tetNig1|chr8 (6531102-6530925) | |
| 35-240, gnl|xenTro1|scaffold_29 (3172991-3173172) | |
| 36-198, gnl|bosTau2|chr14 (10384759-10384920) | |
| 36-198, gnl|Hg17|chr2 (175502719-175502558) | |
| 36-198, gnl|Mm7|chr2 (73468768-73468607) | |
| 289-428, gnl|bosTau2|chr4 (37686300-37686439) | |
| 289-428, gnl|canFam2|chr14 (45461830-45462013) | |
| 289-428, gnl|danRer3|chr16 (12000382-12000197) | |
| 289-428, gnl|dasNov1|scaffold_1960 (3792-3975) | |
| 289-428, gnl|echTel1|scaffold_284415 (133575-133723) | |
| 289-428, gnl|fr1|chrUn (103549786-103549634) | |
| 289-428, gnl|galGal2|chr2 (32930848-32931031) | |
| 289-428, gnl|hg17|chr7 (29320074-29320257) | |
| 289-428, gnl|Hg17|chr7 (29320082-29320221) | |
| 289-428, gnl|loxAfr1|scaffold_5341 (61253-61436) | |
| 289-428, gnl|mm7|chr6 (54259144-54259314) | |
| 289-428, gnl|Mm7|chr6 (54259152-54259291) | |
| 289-428, gnl|monDom2|scaffold_7 (90660872-90660715) | |
| 289-428, gnl|oryCun1|scaffold_175470 (61362-61179) | |
| 289-428, gnl|panTro1|chr6 (30474981-30475164) | |
| 289-428, gnl|rheMac2|chr3 (96697483-96697300) | |
| 289-428, gnl|rn3|chr4 (82959208-82959378) | |
| 289-428, gnl|tetNig1|chr8 (6530678-6530527) | |
| 289-428, gnl|xenTro1|scaffold_29 (3177590-3177751) | |
| 535-672, gnl|bosTau2|chr4 (37694856-37694993) | |
| 535-672, gnl|canFam2|chr14 (45467208-45467415) | |
| 535-672, gnl|danRer3|chr16 (11994019-11993820) | |
| 535-672, gnl|dasNov1|scaffold_15098 (5080-4873) | |
| 535-672, gnl|echTel1|scaffold_235304 (18217-18424) | |
| 535-672, gnl|fr1|chrUn (103549394-103549208) | |
| 535-672, gnl|galGal2|chr2 (32935357-32935553) | |
| 535-672, gnl|hg17|chr7 (29325407-29325614) | |
| 535-672, gnl|Hg17|chr7 (29325420-29325557) | |
| 535-672, gnl|loxAfr1|scaffold_5341 (65461-65666) | |
| 535-672, gnl|mm7|chr6 (54263430-54263633) | |
| 535-672, gnl|Mm7|chr6 (54263443-54263580) | |
| 535-672, gnl|monDom2|scaffold_7 (90655428-90655233) | |
| 535-672, gnl|oryCun1|scaffold_175470 (56895-56682) | |
| 535-672, gnl|panTro1|chr6 (30481239-30481451) | |
| 535-672, gnl|rheMac2|chr3 (96692120-96691913) | |
| 535-672, gnl|rn3|chr4 (82962901-82963104) | |
| 535-672, gnl|tetNig1|chr8 (6530279-6530123) | |
| 535-672, gnl|xenTro1|scaffold_29 (3181928-3182116) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |