Ss1.1-Pig2-25N05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCAACCAGCTCTTCTCTCGACAGCTACACGGCCGTCAACCAGGCCCAGCTCAACGCAG TGACCTCATTAACGCCCCCGTCGTCCCCTGAGCTCAGCCGCCATCTGGTCAAAACCTCAC AGACTCTCTCAGCCGTGGATGGCACAGTGACGTTGAAACTGGTGGCCAAGAAGGCTGCGC TCAGCTCAGTGAAGGTGGGAGGGGTGGCAACAGCAGCGGCAGCCGTGGCGGCAGCTGGGA CAGTTAAGAGTGGACAGAGCGACAGCGAACAAGGAGGGGTAGGGGCTGAGGCATGCCCCG AAAACAAGAAGAGGGTTCACCGCTGTCAGTTTAACGGGTGCCGGAAAGTTTATACAAAAA GCTCCCACTTAAAGGCCCACCAGAGGACTCACACAGGTGAGAAGCCTTATAAGTGCTCAT GGGAAGGGTGTGAGTGGCGTTTTGCACGAAGCGATGAGCTCACAAGGCACTACAGGAAAC ACACAGGTGCAAAGCCCTTTAAATGCAACCACTGCGACAGGTGTTTTTCCAGGTCTGACC ATCTTGCCCTCCATATGAAGAGACATATCTAAGAAAGCTAAAGGCCAGAGTTGCCATGGC ATCGGCCATTGTCTGAAGGAAATGCCGCGAGGCGGGGCTGGACTTCGAGCGGGGACCCAT TGCCTCGCAGGAGAAAGTTCTCACTGATAACCCTCTGTGTACACACACGCACACATGGGC ACACACACACACAGTCATGCACTCAGTTATATTTAAAATATATACGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCAACCAGCTCTTCTCTCGACAGCTACACGGCCGTCAACCAGGCCCAGCTCAACGCAG TGACCTCATTAACGCCCCCGTCGTCCCCTGAGCTCAGCCGCCATCTGGTCAAAACCTCAC AGACTCTCTCAGCCGTGGATGGCACAGTGACGTTGAAACTGGTGGCCAAGAAGGCTGCGC TCAGCTCAGTGAAGGTGGGAGGGGTGGCAACAGCAGCGGCAGCCGTGGCGGCAGCTGGGA CAGTTAAGAGTGGACAGAGCGACAGCGAACAAGGAGGGGTAGGGGCTGAGGCATGCCCCG AAAACAAGAAGAGGGTTCACCGCTGTCAGTTTAACGGGTGCCGGAAAGTTTATACAAAAA GCTCCCACTTAAAGGCCCACCAGAGGACTCACACAGGTGAGAAGCCTTATAAGTGCTCAT GGGAAGGGTGTGAGTGGCGTTTTGCACGAAGCGATGAGCTCACAAGGCACTACAGGAAAC ACACAGGTGCAAAGCCCTTTAAATGCAACCACTGCGACAGGTGTTTTTCCAGGTCTGACC ATCTTGCCCTCCATATGAAGAGACATATCTAAGAAAGCTAAAGGCCAGAGTTGCCATGGC ATCGGCCATTGTCTGAAGGAAATGCCGCGAGGCGGGGCTGGACTTCGAGCGGGGACCCAT TGCCTCGCAGGAGAAAGTTCTCACTGATAACCCTCTGTGTACACACACGCACACATGGGC ACACACACACACAGTCATGCACTCAGTTATATTTAAAATATATACGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 394-522, gnl|bosTau2|chr13 (29623198-29623070) | |
| 394-522, gnl|canFam2|chr2 (34504308-34504164) | |
| 394-522, gnl|canFam2|chr37 (18528588-18528707) | |
| 394-522, gnl|danRer3|chr24 (3153111-3153251) | |
| 394-522, gnl|danRer3|chr9 (20911525-20911408) | |
| 394-522, gnl|dasNov1|scaffold_2774 (7042-6898) | |
| 394-522, gnl|dasNov1|scaffold_6822 (52199-52080) | |
| 394-522, gnl|echTel1|scaffold_284202 (80140-80021) | |
| 394-522, gnl|echTel1|scaffold_284202 (80151-80007) | |
| 394-522, gnl|fr1|chrUn (75495522-75495637) | |
| 394-522, gnl|fr1|chrUn (50677269-50677131) | |
| 394-522, gnl|galGal2|chr2 (11165398-11165542) | |
| 394-522, gnl|galGal2|chr7 (13201671-13201552) | |
| 394-522, gnl|hg17|chr10 (3812290-3812434) | |
| 394-522, gnl|Hg17|chr10 (3812424-3812296) | |
| 394-522, gnl|hg17|chr3 (172153391-172153510) | |
| 394-522, gnl|loxAfr1|scaffold_10647 (58651-58532) | |
| 394-522, gnl|loxAfr1|scaffold_10647 (58662-58518) | |
| 394-522, gnl|mm7|chr13 (5751773-5751655) | |
| 394-522, gnl|mm7|chr13 (5751785-5751640) | |
| 394-522, gnl|Mm7|chr13 (5751649-5751777) | |
| 394-522, gnl|monDom2|scaffold_39 (16107821-16107702) | |
| 394-522, gnl|monDom2|scaffold_7 (29300911-29301055) | |
| 394-522, gnl|oryCun1|scaffold_212296 (22674-22793) | |
| 394-522, gnl|oryCun1|scaffold_212296 (22640-22807) | |
| 394-522, gnl|panTro1|chr2 (175643614-175643733) | |
| 394-522, gnl|panTro1|chr8 (3872501-3872645) | |
| 394-522, gnl|rheMac2|chr9 (4062926-4063045) | |
| 394-522, gnl|rheMac2|chr9 (4062915-4063059) | |
| 394-522, gnl|rn3|chr17 (75590612-75590730) | |
| 394-522, gnl|rn3|chr17 (75590600-75590744) | |
| 394-522, gnl|tetNig1|chr3 (1947195-1947076) | |
| 394-522, gnl|tetNig1|chrUn_random (133795748-133795604) | |
| 394-522, gnl|xenTro1|scaffold_137 (334435-334580) | |
| 394-522, gnl|xenTro1|scaffold_240 (1410441-1410322) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 394-522, gnl|bosTau2|chr13 (29623198-29623070) | |
| 394-522, gnl|canFam2|chr2 (34504308-34504164) | |
| 394-522, gnl|canFam2|chr37 (18528588-18528707) | |
| 394-522, gnl|danRer3|chr24 (3153111-3153251) | |
| 394-522, gnl|danRer3|chr9 (20911525-20911408) | |
| 394-522, gnl|dasNov1|scaffold_2774 (7042-6898) | |
| 394-522, gnl|dasNov1|scaffold_6822 (52199-52080) | |
| 394-522, gnl|echTel1|scaffold_284202 (80140-80021) | |
| 394-522, gnl|echTel1|scaffold_284202 (80151-80007) | |
| 394-522, gnl|fr1|chrUn (75495522-75495637) | |
| 394-522, gnl|fr1|chrUn (50677269-50677131) | |
| 394-522, gnl|galGal2|chr2 (11165398-11165542) | |
| 394-522, gnl|galGal2|chr7 (13201671-13201552) | |
| 394-522, gnl|hg17|chr10 (3812290-3812434) | |
| 394-522, gnl|Hg17|chr10 (3812424-3812296) | |
| 394-522, gnl|hg17|chr3 (172153391-172153510) | |
| 394-522, gnl|loxAfr1|scaffold_10647 (58651-58532) | |
| 394-522, gnl|loxAfr1|scaffold_10647 (58662-58518) | |
| 394-522, gnl|mm7|chr13 (5751773-5751655) | |
| 394-522, gnl|mm7|chr13 (5751785-5751640) | |
| 394-522, gnl|Mm7|chr13 (5751649-5751777) | |
| 394-522, gnl|monDom2|scaffold_39 (16107821-16107702) | |
| 394-522, gnl|monDom2|scaffold_7 (29300911-29301055) | |
| 394-522, gnl|oryCun1|scaffold_212296 (22674-22793) | |
| 394-522, gnl|oryCun1|scaffold_212296 (22640-22807) | |
| 394-522, gnl|panTro1|chr2 (175643614-175643733) | |
| 394-522, gnl|panTro1|chr8 (3872501-3872645) | |
| 394-522, gnl|rheMac2|chr9 (4062926-4063045) | |
| 394-522, gnl|rheMac2|chr9 (4062915-4063059) | |
| 394-522, gnl|rn3|chr17 (75590612-75590730) | |
| 394-522, gnl|rn3|chr17 (75590600-75590744) | |
| 394-522, gnl|tetNig1|chr3 (1947195-1947076) | |
| 394-522, gnl|tetNig1|chrUn_random (133795748-133795604) | |
| 394-522, gnl|xenTro1|scaffold_137 (334435-334580) | |
| 394-522, gnl|xenTro1|scaffold_240 (1410441-1410322) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) |