Ss1.1-Pig2-26D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGAGGAGCCAAAGGTGAGTGAAGAGCTCAAGGATTTAATCCTGAAGATGCTAGACAAGA ACCCGGAAACGAGAATTGGGGTGCCAGACATCAAGTTACACCCCTGGGTGACCAAGAACG GGGAGGAGCCCCTTCCCTCGGAGGAGGAGCACTGCAGCGTGGTGGAGGTGACCGAGGAGG AGGTCAAGAATTCAGTCAGGCTCATCCCCAGCTGGACCACAGTGATCCTGGTTAAGTCCA TGCTGAGGAAGCGTTCCTTTGGGAACCCATTTGAGCCCCAGGCGCGTAGAGAAGAGCGAT CCATGTCGGCTCCAGGAAACTTAGTGTCGTAAGTACTGGTGGGCTGAGGCCGGCAGGTGC TCGCTGGGGTGGGGCGGGGTAGGTGCAGGCTGAGCCCTGGCACTCAGAGCCGGGGCCCAT GTGCACCTCTGTTTTCAGCCTAGTCAAGGTTTGCGGACAGGCCTGGGGTCTGCTCCTTGT AAGAAGGTTGGCTTGTCTGTGGAGGGAGGGACACTTCTGTTGACTCTTCCTGGCCCAGGG CAGTGTTAGCTGCTTGAATGGCTTGTGCTTCCTCCAGCCATTGCTGAGGCCGAGGGCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGAGGAGCCAAAGGTGAGTGAAGAGCTCAAGGATTTAATCCTGAAGATGCTAGACAAGA ACCCGGAAACGAGAATTGGGGTGCCAGACATCAAGTTACACCCCTGGGTGACCAAGAACG GGGAGGAGCCCCTTCCCTCGGAGGAGGAGCACTGCAGCGTGGTGGAGGTGACCGAGGAGG AGGTCAAGAATTCAGTCAGGCTCATCCCCAGCTGGACCACAGTGATCCTGGTTAAGTCCA TGCTGAGGAAGCGTTCCTTTGGGAACCCATTTGAGCCCCAGGCGCGTAGAGAAGAGCGAT CCATGTCGGCTCCAGGAAACTTAGTGTCGTAAGTACTGGTGGGCTGAGGCCGGCAGGTGC TCGCTGGGGTGGGGCGGGGTAGGTGCAGGCTGAGCCCTGGCACTCAGAGCCGGGGCCCAT GTGCACCTCTGTTTTCAGCCTAGTCAAGGTTTGCGGACAGGCCTGGGGTCTGCTCCTTGT AAGAAGGTTGGCTTGTCTGTGGAGGGAGGGACACTTCTGTTGACTCTTCCTGGCCCAGGG CAGTGTTAGCTGCTTGAATGGCTTGTGCTTCCTCCAGCCATTGCTGAGGCCGAGGGCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 489-600, - strand, RNAz p=0.998224 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 489-600, - strand, RNAz p=0.998224 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 93-224, gnl|bosTau2|chr17 (28216590-28216459) | |
| 93-224, gnl|canFam2|chr26 (10903591-10903486) | |
| 93-224, gnl|danRer3|chr5 (27177336-27177233) | |
| 93-224, gnl|dasNov1|scaffold_219467 (3197-3302) | |
| 93-224, gnl|fr1|chrUn (262032148-262032251) | |
| 93-224, gnl|galGal2|chr15 (5397239-5397345) | |
| 93-224, gnl|hg17|chr12 (120149123-120149228) | |
| 93-224, gnl|Hg17|chr12 (120149260-120149129) | |
| 93-224, gnl|loxAfr1|scaffold_133 (233655-233761) | |
| 93-224, gnl|mm7|chr5 (121976316-121976421) | |
| 93-224, gnl|Mm7|chr5 (121976453-121976322) | |
| 93-224, gnl|monDom2|scaffold_97 (1441867-1441972) | |
| 93-224, gnl|oryCun1|scaffold_154581 (13194-13089) | |
| 93-224, gnl|panTro1|chr10 (123231642-123231747) | |
| 93-224, gnl|rheMac2|chr11 (122320918-122321023) | |
| 93-224, gnl|rn3|chr12 (34793865-34793760) | |
| 93-224, gnl|tetNig1|chrUn_random (115042070-115042176) | |
| 93-224, gnl|xenTro1|scaffold_501 (811158-811263) | |
| 436-600, gnl|bosTau2|chr19 (19066857-19066699) | |
| 436-600, gnl|Hg17|chr17 (3715584-3715423) | |
| 436-600, gnl|Mm7|chr11 (73120307-73120523) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-224, gnl|bosTau2|chr17 (28216590-28216459) | |
| 93-224, gnl|canFam2|chr26 (10903591-10903486) | |
| 93-224, gnl|danRer3|chr5 (27177336-27177233) | |
| 93-224, gnl|dasNov1|scaffold_219467 (3197-3302) | |
| 93-224, gnl|fr1|chrUn (262032148-262032251) | |
| 93-224, gnl|galGal2|chr15 (5397239-5397345) | |
| 93-224, gnl|hg17|chr12 (120149123-120149228) | |
| 93-224, gnl|Hg17|chr12 (120149260-120149129) | |
| 93-224, gnl|loxAfr1|scaffold_133 (233655-233761) | |
| 93-224, gnl|mm7|chr5 (121976316-121976421) | |
| 93-224, gnl|Mm7|chr5 (121976453-121976322) | |
| 93-224, gnl|monDom2|scaffold_97 (1441867-1441972) | |
| 93-224, gnl|oryCun1|scaffold_154581 (13194-13089) | |
| 93-224, gnl|panTro1|chr10 (123231642-123231747) | |
| 93-224, gnl|rheMac2|chr11 (122320918-122321023) | |
| 93-224, gnl|rn3|chr12 (34793865-34793760) | |
| 93-224, gnl|tetNig1|chrUn_random (115042070-115042176) | |
| 93-224, gnl|xenTro1|scaffold_501 (811158-811263) | |
| 436-600, gnl|bosTau2|chr19 (19066857-19066699) | |
| 436-600, gnl|Hg17|chr17 (3715584-3715423) | |
| 436-600, gnl|Mm7|chr11 (73120307-73120523) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) |