Non-Coding RNA Search

Ss1.1-Pig2-26I15.5

Sequence:


               
               TGCTTCTCATTACAGGCATATTACAAATAGCAAAAGTAAAGGAAATAGGTATTTCATTAT
AGAAAAGAAAAAATTAAAGCTTCTCGCTTTTCAGTGCCTGATTGAGAGAACACACAATGT
CGCACTTTAATAATTTCAGTAGAGGGGGTGGTGAACTTTTCAAGTGGATTTAATGGCAAT
GGGCAGTAACTTGGGGGAAAGAGGTTAATGTGTGAGCCTCCCTCAAATTCAGAGAATCGC
TTGAGCATCTGTAAGCCAAGAGGTGCTTAGATCAAGCCCCAAGCCCAGGGGCAGTGGAAC
CTGGTGTTCTGTCATCTCCTAAATCTTCTGAGGCTGAGGCAGGCCACATGCAATAAATTG
TGACCCTGCTTCCCATGGGTCATGCCAAACTCTTGAAGAGTTTTTACCGTGGGGCACATG
AATTGAGGTCAACCAGGCACACCCTGTGAGAACCAAGTACCTACATTTCTGAGGCAGGGG
CTCACAGTCAGGGATGCATTCTGGCCAAGGAACCAAGAGCTGTGGTTTCAGGGCTATAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTCTCATTACAGGCATATTACAAATAGCAAAAGTAAAGGAAATAGGTATTTCATTAT
AGAAAAGAAAAAATTAAAGCTTCTCGCTTTTCAGTGCCTGATTGAGAGAACACACAATGT
CGCACTTTAATAATTTCAGTAGAGGGGGTGGTGAACTTTTCAAGTGGATTTAATGGCAAT
GGGCAGTAACTTGGGGGAAAGAGGTTAATGTGTGAGCCTCCCTCAAATTCAGAGAATCGC
TTGAGCATCTGTAAGCCAAGAGGTGCTTAGATCAAGCCCCAAGCCCAGGGGCAGTGGAAC
CTGGTGTTCTGTCATCTCCTAAATCTTCTGAGGCTGAGGCAGGCCACATGCAATAAATTG
TGACCCTGCTTCCCATGGGTCATGCCAAACTCTTGAAGAGTTTTTACCGTGGGGCACATG
AATTGAGGTCAACCAGGCACACCCTGTGAGAACCAAGTACCTACATTTCTGAGGCAGGGG
CTCACAGTCAGGGATGCATTCTGGCCAAGGAACCAAGAGCTGTGGTTTCAGGGCTATAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-380, - strand, RNAz p=0.954619

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-380, - strand, RNAz p=0.954619

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               281-523, gnl|bosTau2|chr15 (26115683-26115925)
               

               
               281-523, gnl|echTel1|scaffold_318290 (30203-29906)
               

               
               281-523, gnl|hg17|chr11 (11936562-11936916)
               

               
               281-523, gnl|Hg17|chr11 (11936645-11936878)
               

               
               281-523, gnl|loxAfr1|scaffold_17010 (34145-34497)
               

               
               281-523, gnl|mm7|chr7 (108027555-108027832)
               

               
               281-523, gnl|Mm7|chr7 (108027584-108027798)
               

               
               281-523, gnl|oryCun1|scaffold_191095 (32479-32795)
               

               
               281-523, gnl|panTro1|chr9 (12189310-12189664)
               

               
               281-523, gnl|rheMac2|chr14 (59956175-59955828)
               

               
               281-523, gnl|rn3|chr1 (170039585-170039875)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-523, gnl|bosTau2|chr15 (26115683-26115925)
               

               
               281-523, gnl|echTel1|scaffold_318290 (30203-29906)
               

               
               281-523, gnl|hg17|chr11 (11936562-11936916)
               

               
               281-523, gnl|Hg17|chr11 (11936645-11936878)
               

               
               281-523, gnl|loxAfr1|scaffold_17010 (34145-34497)
               

               
               281-523, gnl|mm7|chr7 (108027555-108027832)
               

               
               281-523, gnl|Mm7|chr7 (108027584-108027798)
               

               
               281-523, gnl|oryCun1|scaffold_191095 (32479-32795)
               

               
               281-523, gnl|panTro1|chr9 (12189310-12189664)
               

               
               281-523, gnl|rheMac2|chr14 (59956175-59955828)
               

               
               281-523, gnl|rn3|chr1 (170039585-170039875)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ute (0.132784)

	281-523, gnl\|bosTau2\|chr15 (26115683-26115925)
	281-523, gnl\|echTel1\|scaffold_318290 (30203-29906)
	281-523, gnl\|hg17\|chr11 (11936562-11936916)
	281-523, gnl\|Hg17\|chr11 (11936645-11936878)
	281-523, gnl\|loxAfr1\|scaffold_17010 (34145-34497)
	281-523, gnl\|mm7\|chr7 (108027555-108027832)
	281-523, gnl\|Mm7\|chr7 (108027584-108027798)
	281-523, gnl\|oryCun1\|scaffold_191095 (32479-32795)
	281-523, gnl\|panTro1\|chr9 (12189310-12189664)
	281-523, gnl\|rheMac2\|chr14 (59956175-59955828)
	281-523, gnl\|rn3\|chr1 (170039585-170039875)