Non-Coding RNA Search

Ss1.1-Pig2-29C03.5

Sequence:


               
               GGCAGCTCCTGTGTGCAGATCCCTGCTGCCAAATCTGCAATGATGTGGCTCTGGAGATTC
AACAGTTGATATTGGGTGAGAGTAGCCTGACCACGCCTACTTCATCGGGGCCATCACATG
GCTCCTCTTGCCTCGATATTTTGTCCCTGTCTAGTCTCTGTTTTGGGCAGAGTCAGCATT
CCCTGCATTCCAAAGAGCTTTCACGTCCATCAGCAACCCGCACGGTGTCACAGCTAACAA
CTCAGAAATCCTTAACCCAGTTAGCTGCCAAGTCAACTGTCAAGTCAGCCACCAAGTCAG
CCAGTGCAGTCACCATCCATGATTACTGGGCTGACCACCAACAGCTAAGGCAGGGATTTC
AAGGGCCAGATGTGCCCTGGGATGCTGGAGTTTTGTCTTCTTCAAGCGTTGAAGAGCCTA
GGATTCATCGAGACAAGAAGAGCAATACTAAATGTGTCCCAGAGAAACAAGAAGGTGCAG
AAGCTGGCTTGGGAGATAAGACGAAGCACTTTCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCTCCTGTGTGCAGATCCCTGCTGCCAAATCTGCAATGATGTGGCTCTGGAGATTC
AACAGTTGATATTGGGTGAGAGTAGCCTGACCACGCCTACTTCATCGGGGCCATCACATG
GCTCCTCTTGCCTCGATATTTTGTCCCTGTCTAGTCTCTGTTTTGGGCAGAGTCAGCATT
CCCTGCATTCCAAAGAGCTTTCACGTCCATCAGCAACCCGCACGGTGTCACAGCTAACAA
CTCAGAAATCCTTAACCCAGTTAGCTGCCAAGTCAACTGTCAAGTCAGCCACCAAGTCAG
CCAGTGCAGTCACCATCCATGATTACTGGGCTGACCACCAACAGCTAAGGCAGGGATTTC
AAGGGCCAGATGTGCCCTGGGATGCTGGAGTTTTGTCTTCTTCAAGCGTTGAAGAGCCTA
GGATTCATCGAGACAAGAAGAGCAATACTAAATGTGTCCCAGAGAAACAAGAAGGTGCAG
AAGCTGGCTTGGGAGATAAGACGAAGCACTTTCCAC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-233, gnl|bosTau2|chr8 (27628884-27628649)
               

               
               1-233, gnl|canFam2|chr11 (54462378-54463149)
               

               
               1-233, gnl|dasNov1|scaffold_56161 (2044-1288)
               

               
               1-233, gnl|echTel1|scaffold_184568 (3022-3797)
               

               
               1-233, gnl|hg17|chr9 (34716133-34716898)
               

               
               1-233, gnl|Hg17|chr9 (34826017-34825764)
               

               
               1-233, gnl|loxAfr1|scaffold_3464 (52320-53032)
               

               
               1-233, gnl|mm7|chr4 (42807768-42808509)
               

               
               1-233, gnl|Mm7|chr4 (42865685-42865450)
               

               
               1-233, gnl|monDom2|scaffold_17 (47124931-47124199)
               

               
               1-233, gnl|oryCun1|scaffold_98736 (18566-17810)
               

               
               1-233, gnl|panTro1|chr11 (35254914-35255669)
               

               
               1-233, gnl|rheMac2|chr15 (42789432-42788670)
               

               
               1-233, gnl|rn3|chr5 (59260286-59261024)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-233, gnl|bosTau2|chr8 (27628884-27628649)
               

               
               1-233, gnl|canFam2|chr11 (54462378-54463149)
               

               
               1-233, gnl|dasNov1|scaffold_56161 (2044-1288)
               

               
               1-233, gnl|echTel1|scaffold_184568 (3022-3797)
               

               
               1-233, gnl|hg17|chr9 (34716133-34716898)
               

               
               1-233, gnl|Hg17|chr9 (34826017-34825764)
               

               
               1-233, gnl|loxAfr1|scaffold_3464 (52320-53032)
               

               
               1-233, gnl|mm7|chr4 (42807768-42808509)
               

               
               1-233, gnl|Mm7|chr4 (42865685-42865450)
               

               
               1-233, gnl|monDom2|scaffold_17 (47124931-47124199)
               

               
               1-233, gnl|oryCun1|scaffold_98736 (18566-17810)
               

               
               1-233, gnl|panTro1|chr11 (35254914-35255669)
               

               
               1-233, gnl|rheMac2|chr15 (42789432-42788670)
               

               
               1-233, gnl|rn3|chr5 (59260286-59261024)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-233, gnl\|bosTau2\|chr8 (27628884-27628649)
	1-233, gnl\|canFam2\|chr11 (54462378-54463149)
	1-233, gnl\|dasNov1\|scaffold_56161 (2044-1288)
	1-233, gnl\|echTel1\|scaffold_184568 (3022-3797)
	1-233, gnl\|hg17\|chr9 (34716133-34716898)
	1-233, gnl\|Hg17\|chr9 (34826017-34825764)
	1-233, gnl\|loxAfr1\|scaffold_3464 (52320-53032)
	1-233, gnl\|mm7\|chr4 (42807768-42808509)
	1-233, gnl\|Mm7\|chr4 (42865685-42865450)
	1-233, gnl\|monDom2\|scaffold_17 (47124931-47124199)
	1-233, gnl\|oryCun1\|scaffold_98736 (18566-17810)
	1-233, gnl\|panTro1\|chr11 (35254914-35255669)
	1-233, gnl\|rheMac2\|chr15 (42789432-42788670)
	1-233, gnl\|rn3\|chr5 (59260286-59261024)