Non-Coding RNA Search

Ss1.1-Pig2-29J08.5

Sequence:


               
               GGTGGGGGTGAGCCGCTGGTACCACCCCCGCCCCAGCCTCAGATGCAGATGTGAGTGCCT
CCACCTTCTCCACGGCGGACTATGTGGTCTTCGTGCTGCTGCTGGTTCTCTCGCTCATCA
TTGGGCTCTACCACGCCTACCGTGGCTGGGGCCGGCACAGCATCGGCCAGCTACTGCTGG
CCGACCGCAAGATGGGCTGCCTTCCTGTGGCGCTGTCCTTGCTGGCCACCTTCCAGTCCG
CCGTGGCCATCCTGGGCGTGCCGTCCGAGATCTACCGATTCGGGACCCAGTACTGGTTCC
TGGGCTGCTGCTATTTCCTGGGGCTCCTGATCCCAGCACACGTCTTCATCCCCATCTTCT
ACCGCCTGATCTCACCAGTGCCTATGAGTACCTGGAGCTCCGGTTCAATAAGGCCGTGCG
GGTCTGCGGGACCGTGACCTTCATCTTTCAGATGGTGATCTACATGGGAGTTGTCCTCTA
TGCACCGTCGCTGGCCCTCAATGCAGTGACTGGCTTTGATCTCTGGCTGTCCGTGCTGAC
CCTAGGCATTGTCTGTAACATCTACACGGCTCTGGGTGGACTGAAGGCAGTCATCTGGAC
AGATGTGTTCCAGACGTTGGTCATGTTCCTAGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGGGTGAGCCGCTGGTACCACCCCCGCCCCAGCCTCAGATGCAGATGTGAGTGCCT
CCACCTTCTCCACGGCGGACTATGTGGTCTTCGTGCTGCTGCTGGTTCTCTCGCTCATCA
TTGGGCTCTACCACGCCTACCGTGGCTGGGGCCGGCACAGCATCGGCCAGCTACTGCTGG
CCGACCGCAAGATGGGCTGCCTTCCTGTGGCGCTGTCCTTGCTGGCCACCTTCCAGTCCG
CCGTGGCCATCCTGGGCGTGCCGTCCGAGATCTACCGATTCGGGACCCAGTACTGGTTCC
TGGGCTGCTGCTATTTCCTGGGGCTCCTGATCCCAGCACACGTCTTCATCCCCATCTTCT
ACCGCCTGATCTCACCAGTGCCTATGAGTACCTGGAGCTCCGGTTCAATAAGGCCGTGCG
GGTCTGCGGGACCGTGACCTTCATCTTTCAGATGGTGATCTACATGGGAGTTGTCCTCTA
TGCACCGTCGCTGGCCCTCAATGCAGTGACTGGCTTTGATCTCTGGCTGTCCGTGCTGAC
CCTAGGCATTGTCTGTAACATCTACACGGCTCTGGGTGGACTGAAGGCAGTCATCTGGAC
AGATGTGTTCCAGACGTTGGTCATGTTCCTAGGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6DJR5_XENTR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6DJR5_XENTR

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-241, + strand, RNAz p=0.609184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-241, + strand, RNAz p=0.609184

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               131-246, + strand, RNAmicro p=0.996159

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               131-246, + strand, RNAmicro p=0.996159

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC015631, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC015631, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               3-388, gnl|bosTau2|chr11 (52110341-52110726)
               

               
               3-388, gnl|canFam2|chr17 (24169247-24169582)
               

               
               3-388, gnl|danRer3|chr20 (29438975-29438650)
               

               
               3-388, gnl|dasNov1|scaffold_104730 (5163-4828)
               

               
               3-388, gnl|echTel1|scaffold_183666 (833-1170)
               

               
               3-388, gnl|fr1|chrUn (253194491-253194087)
               

               
               3-388, gnl|galGal2|chrUn (46113334-46112999)
               

               
               3-388, gnl|hg17|chr2 (27341766-27342101)
               

               
               3-388, gnl|Hg17|chr2 (27342162-27341777)
               

               
               3-388, gnl|loxAfr1|scaffold_17105 (35358-35021)
               

               
               3-388, gnl|mm7|chr5 (30075455-30075790)
               

               
               3-388, gnl|Mm7|chr5 (30075848-30075466)
               

               
               3-388, gnl|monDom2|scaffold_1 (149084167-149083832)
               

               
               3-388, gnl|oryCun1|scaffold_203841 (138871-138536)
               

               
               3-388, gnl|panTro1|chr12 (28280669-28281004)
               

               
               3-388, gnl|rheMac2|chr13 (27173557-27173892)
               

               
               3-388, gnl|rn3|chr6 (25309200-25308865)
               

               
               3-388, gnl|tetNig1|chrUn_random (83844811-83845207)
               

               
               3-388, gnl|xenTro1|scaffold_661 (551140-551475)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-388, gnl|bosTau2|chr11 (52110341-52110726)
               

               
               3-388, gnl|canFam2|chr17 (24169247-24169582)
               

               
               3-388, gnl|danRer3|chr20 (29438975-29438650)
               

               
               3-388, gnl|dasNov1|scaffold_104730 (5163-4828)
               

               
               3-388, gnl|echTel1|scaffold_183666 (833-1170)
               

               
               3-388, gnl|fr1|chrUn (253194491-253194087)
               

               
               3-388, gnl|galGal2|chrUn (46113334-46112999)
               

               
               3-388, gnl|hg17|chr2 (27341766-27342101)
               

               
               3-388, gnl|Hg17|chr2 (27342162-27341777)
               

               
               3-388, gnl|loxAfr1|scaffold_17105 (35358-35021)
               

               
               3-388, gnl|mm7|chr5 (30075455-30075790)
               

               
               3-388, gnl|Mm7|chr5 (30075848-30075466)
               

               
               3-388, gnl|monDom2|scaffold_1 (149084167-149083832)
               

               
               3-388, gnl|oryCun1|scaffold_203841 (138871-138536)
               

               
               3-388, gnl|panTro1|chr12 (28280669-28281004)
               

               
               3-388, gnl|rheMac2|chr13 (27173557-27173892)
               

               
               3-388, gnl|rn3|chr6 (25309200-25308865)
               

               
               3-388, gnl|tetNig1|chrUn_random (83844811-83845207)
               

               
               3-388, gnl|xenTro1|scaffold_661 (551140-551475)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	3-388, gnl\|bosTau2\|chr11 (52110341-52110726)
	3-388, gnl\|canFam2\|chr17 (24169247-24169582)
	3-388, gnl\|danRer3\|chr20 (29438975-29438650)
	3-388, gnl\|dasNov1\|scaffold_104730 (5163-4828)
	3-388, gnl\|echTel1\|scaffold_183666 (833-1170)
	3-388, gnl\|fr1\|chrUn (253194491-253194087)
	3-388, gnl\|galGal2\|chrUn (46113334-46112999)
	3-388, gnl\|hg17\|chr2 (27341766-27342101)
	3-388, gnl\|Hg17\|chr2 (27342162-27341777)
	3-388, gnl\|loxAfr1\|scaffold_17105 (35358-35021)
	3-388, gnl\|mm7\|chr5 (30075455-30075790)
	3-388, gnl\|Mm7\|chr5 (30075848-30075466)
	3-388, gnl\|monDom2\|scaffold_1 (149084167-149083832)
	3-388, gnl\|oryCun1\|scaffold_203841 (138871-138536)
	3-388, gnl\|panTro1\|chr12 (28280669-28281004)
	3-388, gnl\|rheMac2\|chr13 (27173557-27173892)
	3-388, gnl\|rn3\|chr6 (25309200-25308865)
	3-388, gnl\|tetNig1\|chrUn_random (83844811-83845207)
	3-388, gnl\|xenTro1\|scaffold_661 (551140-551475)