Non-Coding RNA Search

Ss1.1-Pig2-2F05.5

Sequence:


               
               TCTTTTTTCCGTTTTTTTGTTTTTTTTTTTTAATTAATTTGGGGGAGGCGGGATATTATC
ATTAGTGCCATTATATCTACTGGATTTTAAGTAGGGAGGGTTCGCTTTTCAAGGTAGTTT
GAAAGTGGGGAGATTCCTTCAGGGGACAGGCTGAGGCTCAGGCATCTGGCTTAACCCAGA
GGGCCATGTGCAGTTTAACAGAACTTCCAGATCAAATCCATGTCCAGTTTTTTCCCAGCT
GTCTTTGGGGTCCCTGCTTAGCCACACACAAGGCTTTCTGAACCGACACCAGGCCAGTCT
GGTCTTTTGACAGCCTGGCCTCTGAGGTCAGACCTTGTGCCCAGCCAGCACCAAGAGAAC
CAGAGGGGGTGTGGCAACCCTCTGAGCGTCTTTTTAGTAACCAGCAGAAAGGGCTCCACA
TGCATTAGCGTCATCATTACTTTTATAAAATAAAAACAAAAGGAGATCTTCCTAACTGGA
TGGTACAGAGAGGAACAGCTTGGGTTTTCGCTTCCGTTCCTGCCTTTTCTCAGCGTGGTT
TTTGATAAGATTTCAGCTTGACGCTTCACCATGAATTGATTTGTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTTTTCCGTTTTTTTGTTTTTTTTTTTTAATTAATTTGGGGGAGGCGGGATATTATC
ATTAGTGCCATTATATCTACTGGATTTTAAGTAGGGAGGGTTCGCTTTTCAAGGTAGTTT
GAAAGTGGGGAGATTCCTTCAGGGGACAGGCTGAGGCTCAGGCATCTGGCTTAACCCAGA
GGGCCATGTGCAGTTTAACAGAACTTCCAGATCAAATCCATGTCCAGTTTTTTCCCAGCT
GTCTTTGGGGTCCCTGCTTAGCCACACACAAGGCTTTCTGAACCGACACCAGGCCAGTCT
GGTCTTTTGACAGCCTGGCCTCTGAGGTCAGACCTTGTGCCCAGCCAGCACCAAGAGAAC
CAGAGGGGGTGTGGCAACCCTCTGAGCGTCTTTTTAGTAACCAGCAGAAAGGGCTCCACA
TGCATTAGCGTCATCATTACTTTTATAAAATAAAAACAAAAGGAGATCTTCCTAACTGGA
TGGTACAGAGAGGAACAGCTTGGGTTTTCGCTTCCGTTCCTGCCTTTTCTCAGCGTGGTT
TTTGATAAGATTTCAGCTTGACGCTTCACCATGAATTGATTTGTTTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-341, - strand, RNAz p=0.691127

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-341, - strand, RNAz p=0.691127

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-585, gnl|bosTau2|chr14 (8097116-8096537)
               

               
               5-585, gnl|Hg17|chr8 (124055058-124055657)
               

               
               5-585, gnl|Mm7|chr15 (57903999-57904494)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-585, gnl|bosTau2|chr14 (8097116-8096537)
               

               
               5-585, gnl|Hg17|chr8 (124055058-124055657)
               

               
               5-585, gnl|Mm7|chr15 (57903999-57904494)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.39557)
               

               
               hea (0.204499)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               hea (0.204499)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)

	5-585, gnl\|bosTau2\|chr14 (8097116-8096537)
	5-585, gnl\|Hg17\|chr8 (124055058-124055657)
	5-585, gnl\|Mm7\|chr15 (57903999-57904494)