Non-Coding RNA Search

Ss1.1-Pig2-2P05.5

Sequence:


               
               TCGACCCACGCGTGCGGTCCAGAGGGGTAGCATCACTGAATTACATTGTTTGCAGAACCG
CTATACCTAAAGTGTGTCTACAATGAGAAATCTTGTTTAACTGGGACCTTTTTGCTATGC
TCTCCTTTTTGGAGAATGAGGCAANGAGAAAGACAATAAGCTTATGATATTGGGGGTTTA
TTTAATACAAGAAACTTCAGTTCCTCCAATTTTCTGCAGCTAACAAAAGTGCACAGAAAT
TAATGTATATTCTGAGAAATATCCCAAGGTACCACATGATCCTAAATCATCAAAATAAAA
TTGATTTATGTTTGGTGTTTTGTACTTACTGAGCCAGGAAAGTAAAGTGGTTCAATTTAG
AAAGTTTTTTCTAAACTAATGGTTACAACAAGATTTTTTTTTTGTACATAGTCAGTTAAC
CAGGAGATTGGAATATTCTGGTTAATTGTGATTTTGCTGTATATTGATATTTTATAGCTT
TCTTACCAGTTCGGTTCTCTGCATTATTGAACTATAATGTTTGGTATTTGGATCCATTCA
GCAAGGATACTTGAAAACTCACCAGCTATCTTTAAAGGCATAATTTGTTTTTTAGTTTGT
TTTTTTCATGAGGTATTTTCGATAAGGGGATGTTTACATTTTAATGTAAAAAATGAAAAC
AGGTATAAATAATGATTTATGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGACCCACGCGTGCGGTCCAGAGGGGTAGCATCACTGAATTACATTGTTTGCAGAACCG
CTATACCTAAAGTGTGTCTACAATGAGAAATCTTGTTTAACTGGGACCTTTTTGCTATGC
TCTCCTTTTTGGAGAATGAGGCAANGAGAAAGACAATAAGCTTATGATATTGGGGGTTTA
TTTAATACAAGAAACTTCAGTTCCTCCAATTTTCTGCAGCTAACAAAAGTGCACAGAAAT
TAATGTATATTCTGAGAAATATCCCAAGGTACCACATGATCCTAAATCATCAAAATAAAA
TTGATTTATGTTTGGTGTTTTGTACTTACTGAGCCAGGAAAGTAAAGTGGTTCAATTTAG
AAAGTTTTTTCTAAACTAATGGTTACAACAAGATTTTTTTTTTGTACATAGTCAGTTAAC
CAGGAGATTGGAATATTCTGGTTAATTGTGATTTTGCTGTATATTGATATTTTATAGCTT
TCTTACCAGTTCGGTTCTCTGCATTATTGAACTATAATGTTTGGTATTTGGATCCATTCA
GCAAGGATACTTGAAAACTCACCAGCTATCTTTAAAGGCATAATTTGTTTTTTAGTTTGT
TTTTTTCATGAGGTATTTTCGATAAGGGGATGTTTACATTTTAATGTAAAAAATGAAAAC
AGGTATAAATAATGATTTATGTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               359-462, - strand, RNAz p=0.847163

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-462, - strand, RNAz p=0.847163

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               17-684, gnl|bosTau2|chr1 (42071763-42071063)
               

               
               17-684, gnl|Hg17|chr3 (124474730-124475668)
               

               
               17-684, gnl|Mm7|chr16 (34987344-34986706)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-684, gnl|bosTau2|chr1 (42071763-42071063)
               

               
               17-684, gnl|Hg17|chr3 (124474730-124475668)
               

               
               17-684, gnl|Mm7|chr16 (34987344-34986706)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	17-684, gnl\|bosTau2\|chr1 (42071763-42071063)
	17-684, gnl\|Hg17\|chr3 (124474730-124475668)
	17-684, gnl\|Mm7\|chr16 (34987344-34986706)