Ss1.1-Pig2-30H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCTTTCAAATACAAGGGCTGCAGAGCGAGCTGTATGATGTTTCCAAAACTGTGGCCAC CTCAAAGCAGTTGGATGTAAAGCTAGCTTCCTTCAAGGCTGCTTTCTTTCCTCAACTTTC ACCTCCTCTGGACACCAGTTCCCTAATGAGTCTTTCCCTGAAGCTAAGCTGTCTGAGTGT TGCTGATGCTGATCTGCTCAACCAGACTTGGTCCCGGGGAGGCAACGAGCAGTGTCGCCG GTACATTGCCAAGCTCATCTCCTGCTTCCCCAGTGTGTGTGTCCGTGATGACAAGGGGAA CCCAGTCTCTTGGAGTTTCACAGACCAGTTTGCCACTATGTGTCATGGCTACACCCTGAC AGAGCATCGCAGGAAGGGGTATAACAGGCTAGTGGCCCTCACGCTGGTCAGGAAGTTGCA AAGCCAGGGATTGCCCTGCCAGGGCAACTTCTGGGATGACAATGAGGCTTCCATCCGCCT CTTGAAGAGCCTGCATGCTGAGCTCCTGCCTTGTCGGTTTTTTAGACTTATTCTCACACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCTTTCAAATACAAGGGCTGCAGAGCGAGCTGTATGATGTTTCCAAAACTGTGGCCAC CTCAAAGCAGTTGGATGTAAAGCTAGCTTCCTTCAAGGCTGCTTTCTTTCCTCAACTTTC ACCTCCTCTGGACACCAGTTCCCTAATGAGTCTTTCCCTGAAGCTAAGCTGTCTGAGTGT TGCTGATGCTGATCTGCTCAACCAGACTTGGTCCCGGGGAGGCAACGAGCAGTGTCGCCG GTACATTGCCAAGCTCATCTCCTGCTTCCCCAGTGTGTGTGTCCGTGATGACAAGGGGAA CCCAGTCTCTTGGAGTTTCACAGACCAGTTTGCCACTATGTGTCATGGCTACACCCTGAC AGAGCATCGCAGGAAGGGGTATAACAGGCTAGTGGCCCTCACGCTGGTCAGGAAGTTGCA AAGCCAGGGATTGCCCTGCCAGGGCAACTTCTGGGATGACAATGAGGCTTCCATCCGCCT CTTGAAGAGCCTGCATGCTGAGCTCCTGCCTTGTCGGTTTTTTAGACTTATTCTCACACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 344-463, + strand, RNAz p=0.576922 | |
| 429-540, - strand, RNAz p=0.789563 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 344-463, + strand, RNAz p=0.576922 | |
| 429-540, - strand, RNAz p=0.789563 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 5-140, gnl|bosTau2|chr23 (19859444-19859313) | |
| 5-140, gnl|canFam2|chr12 (20374843-20375121) | |
| 5-140, gnl|echTel1|scaffold_316686 (82807-83079) | |
| 5-140, gnl|hg17|chr6 (49597240-49597521) | |
| 5-140, gnl|Hg17|chr6 (49597305-49597439) | |
| 5-140, gnl|loxAfr1|scaffold_69665 (5887-5611) | |
| 5-140, gnl|mm7|chr17 (38950880-38950606) | |
| 5-140, gnl|Mm7|chr17 (38950822-38950682) | |
| 5-140, gnl|monDom2|scaffold_0 (189436761-189436463) | |
| 5-140, gnl|oryCun1|scaffold_195602 (107471-107731) | |
| 5-140, gnl|panTro1|chr5 (50383137-50383418) | |
| 5-140, gnl|rheMac2|chr4 (49242969-49243250) | |
| 5-140, gnl|rn3|chr9 (16121903-16122177) | |
| 145-540, gnl|bosTau2|chr23 (19855148-19854753) | |
| 145-540, gnl|canFam2|chr12 (20376773-20377134) | |
| 145-540, gnl|echTel1|scaffold_316686 (86237-86598) | |
| 145-540, gnl|fr1|chrUn (117784499-117784861) | |
| 145-540, gnl|hg17|chr6 (49602143-49602504) | |
| 145-540, gnl|Hg17|chr6 (49602160-49602555) | |
| 145-540, gnl|loxAfr1|scaffold_69665 (2661-2300) | |
| 145-540, gnl|mm7|chr17 (38945835-38945474) | |
| 145-540, gnl|Mm7|chr17 (38945816-38945421) | |
| 145-540, gnl|monDom2|scaffold_0 (189434561-189434205) | |
| 145-540, gnl|oryCun1|scaffold_43304 (372-739) | |
| 145-540, gnl|panTro1|chr5 (50388001-50388362) | |
| 145-540, gnl|rheMac2|chr4 (49247908-49248269) | |
| 145-540, gnl|rn3|chr9 (16128370-16128731) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-140, gnl|bosTau2|chr23 (19859444-19859313) | |
| 5-140, gnl|canFam2|chr12 (20374843-20375121) | |
| 5-140, gnl|echTel1|scaffold_316686 (82807-83079) | |
| 5-140, gnl|hg17|chr6 (49597240-49597521) | |
| 5-140, gnl|Hg17|chr6 (49597305-49597439) | |
| 5-140, gnl|loxAfr1|scaffold_69665 (5887-5611) | |
| 5-140, gnl|mm7|chr17 (38950880-38950606) | |
| 5-140, gnl|Mm7|chr17 (38950822-38950682) | |
| 5-140, gnl|monDom2|scaffold_0 (189436761-189436463) | |
| 5-140, gnl|oryCun1|scaffold_195602 (107471-107731) | |
| 5-140, gnl|panTro1|chr5 (50383137-50383418) | |
| 5-140, gnl|rheMac2|chr4 (49242969-49243250) | |
| 5-140, gnl|rn3|chr9 (16121903-16122177) | |
| 145-540, gnl|bosTau2|chr23 (19855148-19854753) | |
| 145-540, gnl|canFam2|chr12 (20376773-20377134) | |
| 145-540, gnl|echTel1|scaffold_316686 (86237-86598) | |
| 145-540, gnl|fr1|chrUn (117784499-117784861) | |
| 145-540, gnl|hg17|chr6 (49602143-49602504) | |
| 145-540, gnl|Hg17|chr6 (49602160-49602555) | |
| 145-540, gnl|loxAfr1|scaffold_69665 (2661-2300) | |
| 145-540, gnl|mm7|chr17 (38945835-38945474) | |
| 145-540, gnl|Mm7|chr17 (38945816-38945421) | |
| 145-540, gnl|monDom2|scaffold_0 (189434561-189434205) | |
| 145-540, gnl|oryCun1|scaffold_43304 (372-739) | |
| 145-540, gnl|panTro1|chr5 (50388001-50388362) | |
| 145-540, gnl|rheMac2|chr4 (49247908-49248269) | |
| 145-540, gnl|rn3|chr9 (16128370-16128731) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |