Non-Coding RNA Search

Ss1.1-Pig2-32F02.5.5

Sequence:


               
               GGAACGAGACACTCAGCAAAGCTTCTGAACAGAAACCTTCAGCCTTGCACAGGGGAGGGG
CTCTGGCTCGGGAAGTTGTCAGGACTCCAGACTGTCGGAGGAGCAGTGGGGTCTGTGTGG
ACAGGGAGACCTGCGTTCTAGCCCGGCTTCACCACCTGCTCTGTGCCCTAAGACCAAACC
TCTCTGGGTCTCCACATCCCAATCTGAGAAATGGGAGGACATGATTTATAGTCTGTCACA
GGCCAGGGGTGAGGTTGAGGTGGGACGCCTTGGTGGGTGAAAGGGCTTTACTACTGTGCT
GAAGACCCTCGAAAGGGGAACCCTATGCTGGTTGTCAAGTGCTTTGAGCCCTCCTGGGTT
AACCTCTGCCCCATTTGTAAAACCACCAGCACTTGGGGGGGGAGGGGGAGGCCCATGGTC
TCTGATGGACGTGGGATTCCGTGGTCTCTTATTCCCATCAGCTGGTTGCTTGTGGGATAG
AATGGGGTGACTTCCGCGTGGGGGATGTCAGGGTTTCCAGGGCACCTGGGACGTCCTTCA
AGTGGGCTGTGGGCCTGTCTTTCTCCCTTCCCTGAAGTCGGCATCCCGGGATGTGTCTGT
GCTTGGCCACGTGTGTCTGGTCTTCTGTCCGTCTTCTGTAGCTTAGCCCCTGTGAGGACT
GGAGTGGGGATGCCACTGGCATCCCAGACGTGGCTCCAGGCTCACGGTGGGAGCCGGGCC
CGCCTGGGTCTCATCTCCCACAATAAAGCCAAGCCCCACACGCCTCACTGCTACCGCTGC
CGCCGTCAATGCTGTGCGCACAACCTCGTCCTGGATTTTAAGGACGTCAAACTGCTGTAG
ACGACTCAATAAATGTCTTCGCATTTTTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACGAGACACTCAGCAAAGCTTCTGAACAGAAACCTTCAGCCTTGCACAGGGGAGGGG
CTCTGGCTCGGGAAGTTGTCAGGACTCCAGACTGTCGGAGGAGCAGTGGGGTCTGTGTGG
ACAGGGAGACCTGCGTTCTAGCCCGGCTTCACCACCTGCTCTGTGCCCTAAGACCAAACC
TCTCTGGGTCTCCACATCCCAATCTGAGAAATGGGAGGACATGATTTATAGTCTGTCACA
GGCCAGGGGTGAGGTTGAGGTGGGACGCCTTGGTGGGTGAAAGGGCTTTACTACTGTGCT
GAAGACCCTCGAAAGGGGAACCCTATGCTGGTTGTCAAGTGCTTTGAGCCCTCCTGGGTT
AACCTCTGCCCCATTTGTAAAACCACCAGCACTTGGGGGGGGAGGGGGAGGCCCATGGTC
TCTGATGGACGTGGGATTCCGTGGTCTCTTATTCCCATCAGCTGGTTGCTTGTGGGATAG
AATGGGGTGACTTCCGCGTGGGGGATGTCAGGGTTTCCAGGGCACCTGGGACGTCCTTCA
AGTGGGCTGTGGGCCTGTCTTTCTCCCTTCCCTGAAGTCGGCATCCCGGGATGTGTCTGT
GCTTGGCCACGTGTGTCTGGTCTTCTGTCCGTCTTCTGTAGCTTAGCCCCTGTGAGGACT
GGAGTGGGGATGCCACTGGCATCCCAGACGTGGCTCCAGGCTCACGGTGGGAGCCGGGCC
CGCCTGGGTCTCATCTCCCACAATAAAGCCAAGCCCCACACGCCTCACTGCTACCGCTGC
CGCCGTCAATGCTGTGCGCACAACCTCGTCCTGGATTTTAAGGACGTCAAACTGCTGTAG
ACGACTCAATAAATGTCTTCGCATTTTTAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-542, gnl|bosTau2|chr4 (36461810-36462390)
               

               
               2-542, gnl|Hg17|chr7 (30923430-30923989)
               

               
               2-542, gnl|Mm7|chr6 (55463928-55464472)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-542, gnl|bosTau2|chr4 (36461810-36462390)
               

               
               2-542, gnl|Hg17|chr7 (30923430-30923989)
               

               
               2-542, gnl|Mm7|chr6 (55463928-55464472)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)

	2-542, gnl\|bosTau2\|chr4 (36461810-36462390)
	2-542, gnl\|Hg17\|chr7 (30923430-30923989)
	2-542, gnl\|Mm7\|chr6 (55463928-55464472)