Non-Coding RNA Search

Ss1.1-Pig2-32G15.5

Sequence:


               
               GGCTTTCTTCATGTCTGCAAGCAGCTGCAGACCATCCCCTGGCCTGCGGCACCCGATGGC
CAGGTTGCAGAATGTCTGCATGTTGGGGACGAGTCCCCTCTTTGCCAGGACTGGCAGCAG
TGCCTTCGCCCCCTCCAGGTCGCCCAGCTTGCTCTTCTTCCTCATCAGCGTGTGGAAGAA
GGTCAGGTCGGCCTCCACCTGGTGCGTGTCCAGGAGGGTCAGCAGCGAGGACTCGGCGGG
GCTGCCGGGCTCCACCAGCTCAGCCAGCAGCGTGAGGGTTTTGATGTCAGGCTGAAGCCC
GTGCTCTGCCATCTTGCCCAGGAAACCCTCCAAGCCCCCCATCAGGGCCAGCCTGTCTGC
TGGGGTAGTCACAGTCCCAAAGGAGACCACAGCTGAGGAGACTGCCCCTGGAGCCAGGAG
GTTGGCCTCCAGCCCCTGGAGAGGTGGCTGCGGGGCCACAGAGCTGAGGGCCACTGTGTG
CTCAGGCTCTGCCTTGGTTTCCACCCCAGGCTGGACCTTGCTGGCGGATCTGGCCTCCTG
AGGCTCCGGCGGCCCCTCAAAGGCCTGAGAAGGTTCCGGAAATAGCTGTCTCTCCAGGGC
CTCCACGTGCAGCCTAGCTGACATGCTGTGGTCCACCTCGGCCCCAGCTCTCTGCCTTGC
CCGCCGCCCACCTGCTGGGGGCTGGAGCAGGACCAGTTCCTCCCTGGGTCTCAAGAGCAC
CGCCGAGGCCACCTCTGGGTCCCCCAGGCCGCAGTCCCGAGCTGCCCCCAACAGTAGGTT
GTAGCCATGCCGGCTCGGCTGGAGCCCCAGACTCAGCATCTGCCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTCTTCATGTCTGCAAGCAGCTGCAGACCATCCCCTGGCCTGCGGCACCCGATGGC
CAGGTTGCAGAATGTCTGCATGTTGGGGACGAGTCCCCTCTTTGCCAGGACTGGCAGCAG
TGCCTTCGCCCCCTCCAGGTCGCCCAGCTTGCTCTTCTTCCTCATCAGCGTGTGGAAGAA
GGTCAGGTCGGCCTCCACCTGGTGCGTGTCCAGGAGGGTCAGCAGCGAGGACTCGGCGGG
GCTGCCGGGCTCCACCAGCTCAGCCAGCAGCGTGAGGGTTTTGATGTCAGGCTGAAGCCC
GTGCTCTGCCATCTTGCCCAGGAAACCCTCCAAGCCCCCCATCAGGGCCAGCCTGTCTGC
TGGGGTAGTCACAGTCCCAAAGGAGACCACAGCTGAGGAGACTGCCCCTGGAGCCAGGAG
GTTGGCCTCCAGCCCCTGGAGAGGTGGCTGCGGGGCCACAGAGCTGAGGGCCACTGTGTG
CTCAGGCTCTGCCTTGGTTTCCACCCCAGGCTGGACCTTGCTGGCGGATCTGGCCTCCTG
AGGCTCCGGCGGCCCCTCAAAGGCCTGAGAAGGTTCCGGAAATAGCTGTCTCTCCAGGGC
CTCCACGTGCAGCCTAGCTGACATGCTGTGGTCCACCTCGGCCCCAGCTCTCTGCCTTGC
CCGCCGCCCACCTGCTGGGGGCTGGAGCAGGACCAGTTCCTCCCTGGGTCTCAAGAGCAC
CGCCGAGGCCACCTCTGGGTCCCCCAGGCCGCAGTCCCGAGCTGCCCCCAACAGTAGGTT
GTAGCCATGCCGGCTCGGCTGGAGCCCCAGACTCAGCATCTGCCTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19526932|ref|NP_598496.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19526932|ref|NP_598496.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               323-423, - strand, RNAz p=0.56836
               

               
               362-641, + strand, RNAz p=0.981329
               

               
               536-628, - strand, RNAz p=0.571476

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-423, - strand, RNAz p=0.56836
               

               
               362-641, + strand, RNAz p=0.981329
               

               
               536-628, - strand, RNAz p=0.571476

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               123-711, gnl|bosTau2|chr25 (34817998-34817410)
               

               
               123-711, gnl|canFam2|chr6 (13175921-13175336)
               

               
               123-711, gnl|danRer3|chr1 (3418109-3417534)
               

               
               123-711, gnl|dasNov1|scaffold_189848 (714-132)
               

               
               123-711, gnl|echTel1|scaffold_172777 (1093-1681)
               

               
               123-711, gnl|fr1|chrUn (239357061-239357598)
               

               
               123-711, gnl|galGal2|chr14 (6495064-6495703)
               

               
               123-711, gnl|hg17|chr7 (98667186-98667771)
               

               
               123-711, gnl|Hg17|chr7 (98667185-98667770)
               

               
               123-711, gnl|loxAfr1|scaffold_86295 (3718-3133)
               

               
               123-711, gnl|mm7|chr5 (144183314-144183899)
               

               
               123-711, gnl|Mm7|chr5 (144183313-144183896)
               

               
               123-711, gnl|monDom2|scaffold_17 (6784746-6785379)
               

               
               123-711, gnl|oryCun1|scaffold_183398 (989-404)
               

               
               123-711, gnl|panTro1|chr6 (100373958-100374543)
               

               
               123-711, gnl|rheMac2|chr3 (46634903-46635488)
               

               
               123-711, gnl|rn3|chr12 (9801014-9800429)
               

               
               123-711, gnl|tetNig1|chr18 (8657996-8658536)
               

               
               123-711, gnl|xenTro1|scaffold_48 (1510726-1511299)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-711, gnl|bosTau2|chr25 (34817998-34817410)
               

               
               123-711, gnl|canFam2|chr6 (13175921-13175336)
               

               
               123-711, gnl|danRer3|chr1 (3418109-3417534)
               

               
               123-711, gnl|dasNov1|scaffold_189848 (714-132)
               

               
               123-711, gnl|echTel1|scaffold_172777 (1093-1681)
               

               
               123-711, gnl|fr1|chrUn (239357061-239357598)
               

               
               123-711, gnl|galGal2|chr14 (6495064-6495703)
               

               
               123-711, gnl|hg17|chr7 (98667186-98667771)
               

               
               123-711, gnl|Hg17|chr7 (98667185-98667770)
               

               
               123-711, gnl|loxAfr1|scaffold_86295 (3718-3133)
               

               
               123-711, gnl|mm7|chr5 (144183314-144183899)
               

               
               123-711, gnl|Mm7|chr5 (144183313-144183896)
               

               
               123-711, gnl|monDom2|scaffold_17 (6784746-6785379)
               

               
               123-711, gnl|oryCun1|scaffold_183398 (989-404)
               

               
               123-711, gnl|panTro1|chr6 (100373958-100374543)
               

               
               123-711, gnl|rheMac2|chr3 (46634903-46635488)
               

               
               123-711, gnl|rn3|chr12 (9801014-9800429)
               

               
               123-711, gnl|tetNig1|chr18 (8657996-8658536)
               

               
               123-711, gnl|xenTro1|scaffold_48 (1510726-1511299)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	323-423, - strand, RNAz p=0.56836
	362-641, + strand, RNAz p=0.981329
	536-628, - strand, RNAz p=0.571476

	123-711, gnl\|bosTau2\|chr25 (34817998-34817410)
	123-711, gnl\|canFam2\|chr6 (13175921-13175336)
	123-711, gnl\|danRer3\|chr1 (3418109-3417534)
	123-711, gnl\|dasNov1\|scaffold_189848 (714-132)
	123-711, gnl\|echTel1\|scaffold_172777 (1093-1681)
	123-711, gnl\|fr1\|chrUn (239357061-239357598)
	123-711, gnl\|galGal2\|chr14 (6495064-6495703)
	123-711, gnl\|hg17\|chr7 (98667186-98667771)
	123-711, gnl\|Hg17\|chr7 (98667185-98667770)
	123-711, gnl\|loxAfr1\|scaffold_86295 (3718-3133)
	123-711, gnl\|mm7\|chr5 (144183314-144183899)
	123-711, gnl\|Mm7\|chr5 (144183313-144183896)
	123-711, gnl\|monDom2\|scaffold_17 (6784746-6785379)
	123-711, gnl\|oryCun1\|scaffold_183398 (989-404)
	123-711, gnl\|panTro1\|chr6 (100373958-100374543)
	123-711, gnl\|rheMac2\|chr3 (46634903-46635488)
	123-711, gnl\|rn3\|chr12 (9801014-9800429)
	123-711, gnl\|tetNig1\|chr18 (8657996-8658536)
	123-711, gnl\|xenTro1\|scaffold_48 (1510726-1511299)