Non-Coding RNA Search

Ss1.1-Pig2-33N22.5

Sequence:


               
               GGGCTTCCGGGAGGCAGGAGGGCGCACCACACGTTCCGAGCGTCTTGTCTTTGGAGGCCG
TGGTGATGGCCCTGGTTCGATTTTCCAGGTGTCATCCCCTGAGCCTTTGGCAGGTTCCGT
CGAAAAATAGGTGGAATCTGGTCCAGCGATCATTTCAGGGTCAGGTGGGAAAGCCAAGGA
CTTGGAAACAGTAGGACGCGCTATCCATTGGGAGGCAAGTGTCTCTCACCTTGGACTTTT
CAGATAGCGCGTCCCTCCGACCCCGCCCTCCACCCCACCGGTCCCCTTAACTGTGCAAGC
AAAATTGTGCATGGTCTTCGTCGATTTAATACCTTGTGTGCAGAAACTACCGCTCCAGAC
GTCGTGCCCCTGTTATGTAGAGCAGATCCCATAAAAAGGTATACCTTATATAATTAGGGG
AAGCTAATGGAATTCATTAGCTGAGTAGAAATGTCTCTGGGTCATATGGTGGTGATGGGT
TTTAACGAATAGGGACCCTGAAACCTGGATATCCTCGCCCACGTCTCGCCCACTGAGGGA
CTGTGGGAAGGGCCAAATCAACCCCCTGGAGGGAAAGGAAACCTCGCCGCCCCCCAAGGG
GTCTCACCTGCATCGATGTTCAGTGTACACAGGCCAAGACCTTGCTCTGGGCTCTGGTTG
GCAGAGTGGTTTCATACCAAGTGTACTCCGTTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTTCCGGGAGGCAGGAGGGCGCACCACACGTTCCGAGCGTCTTGTCTTTGGAGGCCG
TGGTGATGGCCCTGGTTCGATTTTCCAGGTGTCATCCCCTGAGCCTTTGGCAGGTTCCGT
CGAAAAATAGGTGGAATCTGGTCCAGCGATCATTTCAGGGTCAGGTGGGAAAGCCAAGGA
CTTGGAAACAGTAGGACGCGCTATCCATTGGGAGGCAAGTGTCTCTCACCTTGGACTTTT
CAGATAGCGCGTCCCTCCGACCCCGCCCTCCACCCCACCGGTCCCCTTAACTGTGCAAGC
AAAATTGTGCATGGTCTTCGTCGATTTAATACCTTGTGTGCAGAAACTACCGCTCCAGAC
GTCGTGCCCCTGTTATGTAGAGCAGATCCCATAAAAAGGTATACCTTATATAATTAGGGG
AAGCTAATGGAATTCATTAGCTGAGTAGAAATGTCTCTGGGTCATATGGTGGTGATGGGT
TTTAACGAATAGGGACCCTGAAACCTGGATATCCTCGCCCACGTCTCGCCCACTGAGGGA
CTGTGGGAAGGGCCAAATCAACCCCCTGGAGGGAAAGGAAACCTCGCCGCCCCCCAAGGG
GTCTCACCTGCATCGATGTTCAGTGTACACAGGCCAAGACCTTGCTCTGGGCTCTGGTTG
GCAGAGTGGTTTCATACCAAGTGTACTCCGTTGTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               488-607, - strand, RNAz p=0.993439

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-607, - strand, RNAz p=0.993439

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-696, gnl|bosTau2|chr8 (43343914-43344589)
               

               
               2-696, gnl|canFam2|chr1 (77504775-77504072)
               

               
               2-696, gnl|dasNov1|scaffold_15699 (4445-3711)
               

               
               2-696, gnl|echTel1|scaffold_309049 (5303-4566)
               

               
               2-696, gnl|galGal2|chrZ_random (13125826-13126532)
               

               
               2-696, gnl|hg17|chr9 (84866605-84867329)
               

               
               2-696, gnl|Hg17|chr9 (84866788-84867474)
               

               
               2-696, gnl|mm7|chr13 (58223770-58224460)
               

               
               2-696, gnl|Mm7|chr13 (58223950-58224602)
               

               
               2-696, gnl|monDom2|scaffold_17 (49581061-49580335)
               

               
               2-696, gnl|oryCun1|scaffold_177337 (53726-53003)
               

               
               2-696, gnl|panTro1|chr11 (68929152-68929876)
               

               
               2-696, gnl|rheMac2|chr15 (93767028-93767751)
               

               
               2-696, gnl|rn3|chr17 (11495327-11494625)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-696, gnl|bosTau2|chr8 (43343914-43344589)
               

               
               2-696, gnl|canFam2|chr1 (77504775-77504072)
               

               
               2-696, gnl|dasNov1|scaffold_15699 (4445-3711)
               

               
               2-696, gnl|echTel1|scaffold_309049 (5303-4566)
               

               
               2-696, gnl|galGal2|chrZ_random (13125826-13126532)
               

               
               2-696, gnl|hg17|chr9 (84866605-84867329)
               

               
               2-696, gnl|Hg17|chr9 (84866788-84867474)
               

               
               2-696, gnl|mm7|chr13 (58223770-58224460)
               

               
               2-696, gnl|Mm7|chr13 (58223950-58224602)
               

               
               2-696, gnl|monDom2|scaffold_17 (49581061-49580335)
               

               
               2-696, gnl|oryCun1|scaffold_177337 (53726-53003)
               

               
               2-696, gnl|panTro1|chr11 (68929152-68929876)
               

               
               2-696, gnl|rheMac2|chr15 (93767028-93767751)
               

               
               2-696, gnl|rn3|chr17 (11495327-11494625)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	2-696, gnl\|bosTau2\|chr8 (43343914-43344589)
	2-696, gnl\|canFam2\|chr1 (77504775-77504072)
	2-696, gnl\|dasNov1\|scaffold_15699 (4445-3711)
	2-696, gnl\|echTel1\|scaffold_309049 (5303-4566)
	2-696, gnl\|galGal2\|chrZ_random (13125826-13126532)
	2-696, gnl\|hg17\|chr9 (84866605-84867329)
	2-696, gnl\|Hg17\|chr9 (84866788-84867474)
	2-696, gnl\|mm7\|chr13 (58223770-58224460)
	2-696, gnl\|Mm7\|chr13 (58223950-58224602)
	2-696, gnl\|monDom2\|scaffold_17 (49581061-49580335)
	2-696, gnl\|oryCun1\|scaffold_177337 (53726-53003)
	2-696, gnl\|panTro1\|chr11 (68929152-68929876)
	2-696, gnl\|rheMac2\|chr15 (93767028-93767751)
	2-696, gnl\|rn3\|chr17 (11495327-11494625)