Non-Coding RNA Search

Ss1.1-Pig2-34D22.5

Sequence:


               
               GCCCACGCGTCCGGTCGAGTCCCCCAAGAGCCACAGCGCTTGGCTTTCTCCTATAGCATC
GTGGGAGGGAATAGTCAGAGCAGATTCAGCCTGCAAGGAGCCATCCTGGTGCACAGTGAC
CTCATGTTGGCGGCCCCCTGGCCAGAGCAACCTCGTACTTATGAGCTCTTGATCCGTGTG
GCTGATGCGGGTCCCTCCATTCCCCACCTCAGCACCACAGCCACTGTCATTGTGCACCTA
GTTCCCTGGAGGGGCAGCACGGTGGCCACCATCACCCACGGAACCACAGTGCCTTCAACG
ATGACACCCCTGCTTGTGACAGATACAGAGGCTTTCTGGCAGCCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGTCGAGTCCCCCAAGAGCCACAGCGCTTGGCTTTCTCCTATAGCATC
GTGGGAGGGAATAGTCAGAGCAGATTCAGCCTGCAAGGAGCCATCCTGGTGCACAGTGAC
CTCATGTTGGCGGCCCCCTGGCCAGAGCAACCTCGTACTTATGAGCTCTTGATCCGTGTG
GCTGATGCGGGTCCCTCCATTCCCCACCTCAGCACCACAGCCACTGTCATTGTGCACCTA
GTTCCCTGGAGGGGCAGCACGGTGGCCACCATCACCCACGGAACCACAGTGCCTTCAACG
ATGACACCCCTGCTTGTGACAGATACAGAGGCTTTCTGGCAGCCAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               173-291, - strand, RNAz p=0.64113

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-291, - strand, RNAz p=0.64113

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               66-291, gnl|bosTau2|chr22 (38138293-38138068)
               

               
               66-291, gnl|canFam2|chr20 (42480411-42479730)
               

               
               66-291, gnl|dasNov1|scaffold_55086 (1007-326)
               

               
               66-291, gnl|echTel1|scaffold_309710 (122108-121360)
               

               
               66-291, gnl|hg17|chr3 (49804888-49805574)
               

               
               66-291, gnl|Hg17|chr3 (49805513-49805288)
               

               
               66-291, gnl|loxAfr1|scaffold_58578 (10990-11677)
               

               
               66-291, gnl|mm7|chr9 (107729738-107729088)
               

               
               66-291, gnl|Mm7|chr9 (107729145-107729370)
               

               
               66-291, gnl|oryCun1|scaffold_191234 (13295-13940)
               

               
               66-291, gnl|panTro1|chr2 (51340396-51341082)
               

               
               66-291, gnl|rn3|chr8 (113287801-113287157)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-291, gnl|bosTau2|chr22 (38138293-38138068)
               

               
               66-291, gnl|canFam2|chr20 (42480411-42479730)
               

               
               66-291, gnl|dasNov1|scaffold_55086 (1007-326)
               

               
               66-291, gnl|echTel1|scaffold_309710 (122108-121360)
               

               
               66-291, gnl|hg17|chr3 (49804888-49805574)
               

               
               66-291, gnl|Hg17|chr3 (49805513-49805288)
               

               
               66-291, gnl|loxAfr1|scaffold_58578 (10990-11677)
               

               
               66-291, gnl|mm7|chr9 (107729738-107729088)
               

               
               66-291, gnl|Mm7|chr9 (107729145-107729370)
               

               
               66-291, gnl|oryCun1|scaffold_191234 (13295-13940)
               

               
               66-291, gnl|panTro1|chr2 (51340396-51341082)
               

               
               66-291, gnl|rn3|chr8 (113287801-113287157)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	66-291, gnl\|bosTau2\|chr22 (38138293-38138068)
	66-291, gnl\|canFam2\|chr20 (42480411-42479730)
	66-291, gnl\|dasNov1\|scaffold_55086 (1007-326)
	66-291, gnl\|echTel1\|scaffold_309710 (122108-121360)
	66-291, gnl\|hg17\|chr3 (49804888-49805574)
	66-291, gnl\|Hg17\|chr3 (49805513-49805288)
	66-291, gnl\|loxAfr1\|scaffold_58578 (10990-11677)
	66-291, gnl\|mm7\|chr9 (107729738-107729088)
	66-291, gnl\|Mm7\|chr9 (107729145-107729370)
	66-291, gnl\|oryCun1\|scaffold_191234 (13295-13940)
	66-291, gnl\|panTro1\|chr2 (51340396-51341082)
	66-291, gnl\|rn3\|chr8 (113287801-113287157)