Ss1.1-Pig2-35D23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAAGGGGACCCCATCAGGGTACAGCCGCTGGAGCTCTGAGGGGAAGAAGCCATCCAATA TGTCTCGAAGGCAGCGCTGTGTGGAGGGCGCGTAGAAGGGCCGGAAGGGCCCGTCAAACA TCATGATGCCGTTCCGGTAGAGCTTCAGTGGGATGGGTTCGAGAGCATGGTGTGGCACTC TGCTGGGCACTGGCGTCACCTGCGTGTCACTGTCTACCACCAGCTCACTGAGATCCTTCA AGCTGGCCAGCAGCCTGTCAAAGTCCACCTCAGGGGGTACCAATGAGTCCCCTGGCTTCC AGAACTTCTTGGCTGTCATCCAGTCCCTCTCGTTATCCTCAGAGTCCTCTTGGTCCACGG GCTCACCCACCCACTGCAGGCCGTAGTCCCCAAGGAACCGCTCCATCTCCCCGACCTGCC GCTGCAGCTGAGTGCACGTTGCTTCCAGCTCCTCCTGCCGCCGCAGGGTCACTGAGCCCT GGTGCTCCTGGAGGGTCTCCACCAATTCCTCCAGGGCCCGTATCTTCCGATCCTTGAACA GCATCTCGTCAGCCTGGGCCTTCACCTGCTGCTCCAGATCCCGCAACTTCTTCATCATGG TGGCCACCAGCTCCGAGTCGTGGGACACAGGGACTTGCCTATTCACCGGGGCACCTACGC TGCCATAGCAGGAAGGGACAGAGATCCTTTCTTCAGAGCCGTGTGCGTCATTCAGCATGT CTACCTCATCTTCATTTCCGTAGATTTTTATCCCTCGCCGCCCCGGGTTCACAGGCTCCG ACTGCAGAGGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAAGGGGACCCCATCAGGGTACAGCCGCTGGAGCTCTGAGGGGAAGAAGCCATCCAATA TGTCTCGAAGGCAGCGCTGTGTGGAGGGCGCGTAGAAGGGCCGGAAGGGCCCGTCAAACA TCATGATGCCGTTCCGGTAGAGCTTCAGTGGGATGGGTTCGAGAGCATGGTGTGGCACTC TGCTGGGCACTGGCGTCACCTGCGTGTCACTGTCTACCACCAGCTCACTGAGATCCTTCA AGCTGGCCAGCAGCCTGTCAAAGTCCACCTCAGGGGGTACCAATGAGTCCCCTGGCTTCC AGAACTTCTTGGCTGTCATCCAGTCCCTCTCGTTATCCTCAGAGTCCTCTTGGTCCACGG GCTCACCCACCCACTGCAGGCCGTAGTCCCCAAGGAACCGCTCCATCTCCCCGACCTGCC GCTGCAGCTGAGTGCACGTTGCTTCCAGCTCCTCCTGCCGCCGCAGGGTCACTGAGCCCT GGTGCTCCTGGAGGGTCTCCACCAATTCCTCCAGGGCCCGTATCTTCCGATCCTTGAACA GCATCTCGTCAGCCTGGGCCTTCACCTGCTGCTCCAGATCCCGCAACTTCTTCATCATGG TGGCCACCAGCTCCGAGTCGTGGGACACAGGGACTTGCCTATTCACCGGGGCACCTACGC TGCCATAGCAGGAAGGGACAGAGATCCTTTCTTCAGAGCCGTGTGCGTCATTCAGCATGT CTACCTCATCTTCATTTCCGTAGATTTTTATCCCTCGCCGCCCCGGGTTCACAGGCTCCG ACTGCAGAGGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 177-281, - strand, RNAz p=0.525048 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 177-281, - strand, RNAz p=0.525048 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 77-296, gnl|bosTau2|chr2 (78147083-78147302) | |
| 77-296, gnl|canFam2|chr2 (76624812-76624569) | |
| 77-296, gnl|dasNov1|scaffold_68838 (3678-3394) | |
| 77-296, gnl|echTel1|scaffold_324004 (10895-10662) | |
| 77-296, gnl|fr1|chrUn (43797284-43797064) | |
| 77-296, gnl|galGal2|chr23 (203353-203104) | |
| 77-296, gnl|hg17|chr1 (26296435-26296678) | |
| 77-296, gnl|Hg17|chr1 (26296456-26296675) | |
| 77-296, gnl|mm7|chr4 (133502044-133501819) | |
| 77-296, gnl|Mm7|chr4 (133502036-133501820) | |
| 77-296, gnl|monDom2|scaffold_91 (3832244-3832488) | |
| 77-296, gnl|oryCun1|scaffold_94010 (4763-4526) | |
| 77-296, gnl|panTro1|chr1 (26984776-26985018) | |
| 77-296, gnl|rheMac2|chr1 (28903659-28903901) | |
| 77-296, gnl|rn3|chr5 (152883615-152883387) | |
| 77-296, gnl|tetNig1|chr8 (5450379-5450174) | |
| 532-635, gnl|bosTau2|chr2 (78158095-78158198) | |
| 532-635, gnl|canFam2|chr2 (76615086-76614972) | |
| 532-635, gnl|dasNov1|scaffold_113810 (3652-3538) | |
| 532-635, gnl|echTel1|scaffold_285233 (634-748) | |
| 532-635, gnl|fr1|chrUn (43796542-43796428) | |
| 532-635, gnl|hg17|chr1 (26308585-26308699) | |
| 532-635, gnl|Hg17|chr1 (26308594-26308697) | |
| 532-635, gnl|mm7|chr4 (133491054-133490946) | |
| 532-635, gnl|Mm7|chr4 (133491043-133490946) | |
| 532-635, gnl|oryCun1|scaffold_170220 (4379-4265) | |
| 532-635, gnl|panTro1|chr1 (26997015-26997129) | |
| 532-635, gnl|rheMac2|chr1 (28915297-28915411) | |
| 532-635, gnl|rn3|chr5 (152873289-152873175) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-296, gnl|bosTau2|chr2 (78147083-78147302) | |
| 77-296, gnl|canFam2|chr2 (76624812-76624569) | |
| 77-296, gnl|dasNov1|scaffold_68838 (3678-3394) | |
| 77-296, gnl|echTel1|scaffold_324004 (10895-10662) | |
| 77-296, gnl|fr1|chrUn (43797284-43797064) | |
| 77-296, gnl|galGal2|chr23 (203353-203104) | |
| 77-296, gnl|hg17|chr1 (26296435-26296678) | |
| 77-296, gnl|Hg17|chr1 (26296456-26296675) | |
| 77-296, gnl|mm7|chr4 (133502044-133501819) | |
| 77-296, gnl|Mm7|chr4 (133502036-133501820) | |
| 77-296, gnl|monDom2|scaffold_91 (3832244-3832488) | |
| 77-296, gnl|oryCun1|scaffold_94010 (4763-4526) | |
| 77-296, gnl|panTro1|chr1 (26984776-26985018) | |
| 77-296, gnl|rheMac2|chr1 (28903659-28903901) | |
| 77-296, gnl|rn3|chr5 (152883615-152883387) | |
| 77-296, gnl|tetNig1|chr8 (5450379-5450174) | |
| 532-635, gnl|bosTau2|chr2 (78158095-78158198) | |
| 532-635, gnl|canFam2|chr2 (76615086-76614972) | |
| 532-635, gnl|dasNov1|scaffold_113810 (3652-3538) | |
| 532-635, gnl|echTel1|scaffold_285233 (634-748) | |
| 532-635, gnl|fr1|chrUn (43796542-43796428) | |
| 532-635, gnl|hg17|chr1 (26308585-26308699) | |
| 532-635, gnl|Hg17|chr1 (26308594-26308697) | |
| 532-635, gnl|mm7|chr4 (133491054-133490946) | |
| 532-635, gnl|Mm7|chr4 (133491043-133490946) | |
| 532-635, gnl|oryCun1|scaffold_170220 (4379-4265) | |
| 532-635, gnl|panTro1|chr1 (26997015-26997129) | |
| 532-635, gnl|rheMac2|chr1 (28915297-28915411) | |
| 532-635, gnl|rn3|chr5 (152873289-152873175) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nmm (0.132802) |