Non-Coding RNA Search

Ss1.1-Pig2-36K13.5

Sequence:


               
               GCAACAGCAGCCTGGACCCCATGTTCTTTGTCTACGTCAACCCCTTCAGCGGGAGCCACT
CGGAGGGCTGGAACATGCCCTTTGGGGAATTCGGCTACCCGCGTTGGGAGAAGATCCGCC
TCCAGAACAGCCAGTGCTACAACTGGACTCTCTTGCTGGGCAACCGGTGGAAAACGTTTT
TCGAGACAGTCCACATCTACCTACGCAGTCGGACTCGGCTACCTACCCTCCTGCGGAATG
AGACTGGCCAGGGCCCCGTGGACCTGTCCGACCCCTCCAAGAGGCAGTTCTACATCAAGA
TCTCGGATGTGCAGGTGTTTGGGTACAGCCTGAGGTTCAACGCCGACCTCCTTCGCAGCG
CGGTGCAGCAGGTCCAGTCCTACACACAAGGCGGCCAGTTCTACTCCTCCTCGTCCGTGA
TGCTCCTCTTGTTGGATATTCGGGACCGAATCAACCGCCTGGCCCCGCCTGTGGCCCCGG
GGAAACCCCAGCTGGACTTGTTCTCGTGTATGCTGAAACACCGCCTGAAACTGACCAACA
GCGAGATCATCAGGGTGAACCACGCCTTGGACCTCTACAACACCGAGATCCTCAAACAGT
CGGATCAGATGACAGCCAAACTCTGTTAACCCGGACCCTTTGCCATGGACGTTCCCTTTT
GTTGTACAAACATAACAGAAGCAAGCAAAGCAAAACAAACAACAATTTGTAAAATGTAAT
TAATATTCAAAGGAAAGGAGGAAAGTCTTCATTCGTGGGAAACCGAAAACGTTCTAGCAA
CTGTATCAATGTGGGGCATGTTTGTTATTTCTATACTCTGTCATGAAGAAGGGTCTCCGC
CTTGGGAGGAGCTCGGAGGGAGTGGCTTCTTAGGCTGTATGGAGGGGGAGATGGGGGAGA
GCATATGCAATGAATTGTAAAGATCTCTGCTGTGCAGGTGCTAAGATGAAACACGAAAAA
AGAAAGAGAGTTATATGTAATGTACAACCGACACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACAGCAGCCTGGACCCCATGTTCTTTGTCTACGTCAACCCCTTCAGCGGGAGCCACT
CGGAGGGCTGGAACATGCCCTTTGGGGAATTCGGCTACCCGCGTTGGGAGAAGATCCGCC
TCCAGAACAGCCAGTGCTACAACTGGACTCTCTTGCTGGGCAACCGGTGGAAAACGTTTT
TCGAGACAGTCCACATCTACCTACGCAGTCGGACTCGGCTACCTACCCTCCTGCGGAATG
AGACTGGCCAGGGCCCCGTGGACCTGTCCGACCCCTCCAAGAGGCAGTTCTACATCAAGA
TCTCGGATGTGCAGGTGTTTGGGTACAGCCTGAGGTTCAACGCCGACCTCCTTCGCAGCG
CGGTGCAGCAGGTCCAGTCCTACACACAAGGCGGCCAGTTCTACTCCTCCTCGTCCGTGA
TGCTCCTCTTGTTGGATATTCGGGACCGAATCAACCGCCTGGCCCCGCCTGTGGCCCCGG
GGAAACCCCAGCTGGACTTGTTCTCGTGTATGCTGAAACACCGCCTGAAACTGACCAACA
GCGAGATCATCAGGGTGAACCACGCCTTGGACCTCTACAACACCGAGATCCTCAAACAGT
CGGATCAGATGACAGCCAAACTCTGTTAACCCGGACCCTTTGCCATGGACGTTCCCTTTT
GTTGTACAAACATAACAGAAGCAAGCAAAGCAAAACAAACAACAATTTGTAAAATGTAAT
TAATATTCAAAGGAAAGGAGGAAAGTCTTCATTCGTGGGAAACCGAAAACGTTCTAGCAA
CTGTATCAATGTGGGGCATGTTTGTTATTTCTATACTCTGTCATGAAGAAGGGTCTCCGC
CTTGGGAGGAGCTCGGAGGGAGTGGCTTCTTAGGCTGTATGGAGGGGGAGATGGGGGAGA
GCATATGCAATGAATTGTAAAGATCTCTGCTGTGCAGGTGCTAAGATGAAACACGAAAAA
AGAAAGAGAGTTATATGTAATGTACAACCGACACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27753569|dbj|BAC55204.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27753569|dbj|BAC55204.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-160, + strand, RNAz p=0.833725

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, + strand, RNAz p=0.833725

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014618, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014618, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-996, gnl|bosTau2|chr8 (60390543-60389535)
               

               
               1-996, gnl|Hg17|chr9 (119009547-119008524)
               

               
               1-996, gnl|Mm7|chr4 (68196335-68195269)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-996, gnl|bosTau2|chr8 (60390543-60389535)
               

               
               1-996, gnl|Hg17|chr9 (119009547-119008524)
               

               
               1-996, gnl|Mm7|chr4 (68196335-68195269)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

	1-996, gnl\|bosTau2\|chr8 (60390543-60389535)
	1-996, gnl\|Hg17\|chr9 (119009547-119008524)
	1-996, gnl\|Mm7\|chr4 (68196335-68195269)

	fcc (0.197785)
	eye (0.170503)
	fco (0.157208)
	hyp (0.142837)
	pgl (0.118483)