Non-Coding RNA Search

Ss1.1-Pig2-37B06.5

Sequence:


               
               GGAAAGATGGGAGGATATGACAGCACAGAGCTGGAAGTCAGAGCTGTGAACCCCCAAGAT
AGTGGTGAACAGAGAAAACGGAGACAGAGAGGCCTGACCCTCAGGGAAGCCCTGTGCGCG
CCCTTCTCCTTGGGTAGGTGAAGTGGAGCTGCCCTTCGTGTGGCCCAGAGCCTGGGGGTG
AAGAGAAGAAGGGGAGAGGAAACCCTATTTCTGTTCAGTTGTTTCCCCCAGAGCTGGTGA
GTCTTTTTTTGGGGTGGGGGGGGCTTGGTGCTAAGACTAAAGGACTGGGGGCCAGATGAC
TGAGGGGCCCCCACGACCCCTGCTTCTGCCCCTGCCCCCAGGTGGAGCACATCGTCTCCT
TCCTCCCAGTCAGAGATGTGGTCGCTCTCAGCCAGACCTGCCACTACTTCCATGAAGTGT
GCGACGCTGAGGGCGTGTGGAGACGCATCTGTCGCCGGCTCAGTCCTCGTCTTCGAGAGC
AGGGTTCCGGGGTCCGGCCCTTATTCCGGGATCCCTCCTGCTCCATAAAGTTGCCAGATG
ATCTTAGTCTTCCCGCCAACCTTCCAGGGCTCCCTTCTCTTCGGGAAGTTTGATCTGGAG
CCCGACTCCTACTGCCGCTACGACTCGGTCAGCGTGTTCAACGGAGCCGTGAGCGACGAC
GCCAAGCGACTGGGGAAGTTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGATGGGAGGATATGACAGCACAGAGCTGGAAGTCAGAGCTGTGAACCCCCAAGAT
AGTGGTGAACAGAGAAAACGGAGACAGAGAGGCCTGACCCTCAGGGAAGCCCTGTGCGCG
CCCTTCTCCTTGGGTAGGTGAAGTGGAGCTGCCCTTCGTGTGGCCCAGAGCCTGGGGGTG
AAGAGAAGAAGGGGAGAGGAAACCCTATTTCTGTTCAGTTGTTTCCCCCAGAGCTGGTGA
GTCTTTTTTTGGGGTGGGGGGGGCTTGGTGCTAAGACTAAAGGACTGGGGGCCAGATGAC
TGAGGGGCCCCCACGACCCCTGCTTCTGCCCCTGCCCCCAGGTGGAGCACATCGTCTCCT
TCCTCCCAGTCAGAGATGTGGTCGCTCTCAGCCAGACCTGCCACTACTTCCATGAAGTGT
GCGACGCTGAGGGCGTGTGGAGACGCATCTGTCGCCGGCTCAGTCCTCGTCTTCGAGAGC
AGGGTTCCGGGGTCCGGCCCTTATTCCGGGATCCCTCCTGCTCCATAAAGTTGCCAGATG
ATCTTAGTCTTCCCGCCAACCTTCCAGGGCTCCCTTCTCTTCGGGAAGTTTGATCTGGAG
CCCGACTCCTACTGCCGCTACGACTCGGTCAGCGTGTTCAACGGAGCCGTGAGCGACGAC
GCCAAGCGACTGGGGAAGTTCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               128-345, - strand, RNAz p=0.99998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-345, - strand, RNAz p=0.99998

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               195-277, + strand, RNAmicro p=0.996084

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               195-277, + strand, RNAmicro p=0.996084

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               129-243, ie66c05.y1 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|BI964210.1|), blast E-value=4e-21, identity=86.96% 
               

               
               129-243, ie55f12.y1 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|BI964723.1|), blast E-value=4e-21, identity=86.96% 
               

               
               129-243, ie66c05.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK903812.1|), blast E-value=4e-21, identity=86.96% 
               

               
               137-239, SlLT02c04p13f1 squirrel testis library 1 Spermophilus lateralis 
(gb|CO733249.1|), blast E-value=5e-33, identity=93.2% 
               

               
               145-239, LB00494.CR_G18 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT852029.1|), 
blast E-value=4e-24, identity=90.82% 
               

               
               132-243, 301488 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', 
(gb|EB527047.1|), blast E-value=4e-24, identity=88.39%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               129-243, ie66c05.y1 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|BI964210.1|), blast E-value=4e-21, identity=86.96% 
               

               
               129-243, ie55f12.y1 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|BI964723.1|), blast E-value=4e-21, identity=86.96% 
               

               
               129-243, ie66c05.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens 
(gb|CK903812.1|), blast E-value=4e-21, identity=86.96% 
               

               
               137-239, SlLT02c04p13f1 squirrel testis library 1 Spermophilus lateralis 
(gb|CO733249.1|), blast E-value=5e-33, identity=93.2% 
               

               
               145-239, LB00494.CR_G18 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT852029.1|), 
blast E-value=4e-24, identity=90.82% 
               

               
               132-243, 301488 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', 
(gb|EB527047.1|), blast E-value=4e-24, identity=88.39%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-501, gnl|bosTau2|chr25 (32378305-32377795)
               

               
               3-501, gnl|Hg17|chr7 (99832133-99832607)
               

               
               3-501, gnl|Mm7|chr5 (136542757-136542246)
               


               
               570-684, gnl|bosTau2|chr25 (32365423-32365309)
               

               
               570-684, gnl|Hg17|chr7 (99847955-99848069)
               

               
               570-684, gnl|Mm7|chr5 (136525541-136525427)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-501, gnl|bosTau2|chr25 (32378305-32377795)
               

               
               3-501, gnl|Hg17|chr7 (99832133-99832607)
               

               
               3-501, gnl|Mm7|chr5 (136542757-136542246)
               


               
               570-684, gnl|bosTau2|chr25 (32365423-32365309)
               

               
               570-684, gnl|Hg17|chr7 (99847955-99848069)
               

               
               570-684, gnl|Mm7|chr5 (136525541-136525427)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.239292)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)

	129-243, ie66c05.y1 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens (gb\|BI964210.1\|), blast E-value=4e-21, identity=86.96%
	129-243, ie55f12.y1 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens (gb\|BI964723.1\|), blast E-value=4e-21, identity=86.96%
	129-243, ie66c05.y5 Melton Normalized Human Islet 4 N4-HIS 1 Homo sapiens (gb\|CK903812.1\|), blast E-value=4e-21, identity=86.96%
	137-239, SlLT02c04p13f1 squirrel testis library 1 Spermophilus lateralis (gb\|CO733249.1\|), blast E-value=5e-33, identity=93.2%
	145-239, LB00494.CR_G18 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb\|DT852029.1\|), blast E-value=4e-24, identity=90.82%
	132-243, 301488 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb\|EB527047.1\|), blast E-value=4e-24, identity=88.39%

	3-501, gnl\|bosTau2\|chr25 (32378305-32377795)
	3-501, gnl\|Hg17\|chr7 (99832133-99832607)
	3-501, gnl\|Mm7\|chr5 (136542757-136542246)

	570-684, gnl\|bosTau2\|chr25 (32365423-32365309)
	570-684, gnl\|Hg17\|chr7 (99847955-99848069)
	570-684, gnl\|Mm7\|chr5 (136525541-136525427)