Ss1.1-Pig2-38O04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGAGCAGCTGAAGGCAAAGCAGCTGACACAGGATGATGATGCTGATGAGGTCGAGATT GCTGTTGACAACACAGCTTTCATGGATGAGTTCTTTTCTGAGATTGAGGAAACTCGACTC AACATTGACAAGATCTCAGAGCATGTGGAGGAAGCTAAGAAACTCTACAGCATCATTCTC TCTGCGCCCATTCCAGAGCCAAAAACCAAGGATGACCTGGAGCAGCTCACGACTGAGATC AAGAAAAGGGCCAACAACGTCCGGAACAAACTGAAGAGCATGGAGAGGCATATCGAAGAA GACGAGGTCCGGTCGTCAGCAGACCTTCGGATTCGGAAATCCCAGCACTCCGTCCTCTCC CGCAAGTTTGTGGAGGTGATGACCAAATACAACGAGGCGCAGGTGGACTTCCGTGAACGC AGCAAAGGGCGGATCCAGCGGCAGCTGGAGATCACTGGCAAGAAGACAACGGATGAGGAG CTGGAGGAGATGCTGGAGAGTGGGAACCCTGCCATCTTCACCTCGGGGATCATCGACTCT CAGATTTCCAAGCAAGCCCTCAGCGAGATCGAGGGGCGGCACAAGGACATTGTGAGGCTG GAGAGCAGCATCAAGGAGCTTCACGACATGTTCATGGACATTGCCATGCTGGTGGAGAAC CAGGGTGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCACGTGGAG AAGGCTCGGGAGGAAACGAAAAGAGCCGTGAAGTACCAGGGTCAGGCCCGCAAGAAATTG ATAATTATCATTGTGGTAGTGGTTGTGTTGCTGGGCATTTTAGCATTGATTATCGGACTT TCCGTGGGGCTGAAGTGAGGGCGGCCTGCGAGGCTGCTGCACTGAAATGTAAGTAAGTAG AAGGTTCCTGGGGACTCTGGATTCGCTCCCTCCTGAGAAGGCAGCCTGGGGTCTCACAGG CGGCTTCTTCCCCCCGTGGTCACCCTTGGGCACACTGCGCTCACTAAAGCTTTCAGCACT CGTGCGTTTTTCAGCTCCGTAACATCTATTCTCGGGTCCTGGCTGCGGCGTGTGGGCGGA GTCTCGGTGGTTCCTCTCCCGTGGGTTCTGTCCTCACTCTGTCTTGTAATGGGCTTCATC ATTGGTCCTCGTTCTCTGAGCACCTCACTTCCACTCCTCTTCCCCAGCAAGCCTGCTCCT AAGTTGGGTACACTCTATGCCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGAGCAGCTGAAGGCAAAGCAGCTGACACAGGATGATGATGCTGATGAGGTCGAGATT GCTGTTGACAACACAGCTTTCATGGATGAGTTCTTTTCTGAGATTGAGGAAACTCGACTC AACATTGACAAGATCTCAGAGCATGTGGAGGAAGCTAAGAAACTCTACAGCATCATTCTC TCTGCGCCCATTCCAGAGCCAAAAACCAAGGATGACCTGGAGCAGCTCACGACTGAGATC AAGAAAAGGGCCAACAACGTCCGGAACAAACTGAAGAGCATGGAGAGGCATATCGAAGAA GACGAGGTCCGGTCGTCAGCAGACCTTCGGATTCGGAAATCCCAGCACTCCGTCCTCTCC CGCAAGTTTGTGGAGGTGATGACCAAATACAACGAGGCGCAGGTGGACTTCCGTGAACGC AGCAAAGGGCGGATCCAGCGGCAGCTGGAGATCACTGGCAAGAAGACAACGGATGAGGAG CTGGAGGAGATGCTGGAGAGTGGGAACCCTGCCATCTTCACCTCGGGGATCATCGACTCT CAGATTTCCAAGCAAGCCCTCAGCGAGATCGAGGGGCGGCACAAGGACATTGTGAGGCTG GAGAGCAGCATCAAGGAGCTTCACGACATGTTCATGGACATTGCCATGCTGGTGGAGAAC CAGGGTGAGATGTTAGATAACATAGAGTTGAATGTCATGCACACAGTGGACCACGTGGAG AAGGCTCGGGAGGAAACGAAAAGAGCCGTGAAGTACCAGGGTCAGGCCCGCAAGAAATTG ATAATTATCATTGTGGTAGTGGTTGTGTTGCTGGGCATTTTAGCATTGATTATCGGACTT TCCGTGGGGCTGAAGTGAGGGCGGCCTGCGAGGCTGCTGCACTGAAATGTAAGTAAGTAG AAGGTTCCTGGGGACTCTGGATTCGCTCCCTCCTGAGAAGGCAGCCTGGGGTCTCACAGG CGGCTTCTTCCCCCCGTGGTCACCCTTGGGCACACTGCGCTCACTAAAGCTTTCAGCACT CGTGCGTTTTTCAGCTCCGTAACATCTATTCTCGGGTCCTGGCTGCGGCGTGTGGGCGGA GTCTCGGTGGTTCCTCTCCCGTGGGTTCTGTCCTCACTCTGTCTTGTAATGGGCTTCATC ATTGGTCCTCGTTCTCTGAGCACCTCACTTCCACTCCTCTTCCCCAGCAAGCCTGCTCCT AAGTTGGGTACACTCTATGCCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 545-669, + strand, RNAz p=0.910093 | |
| 550-669, + strand, RNAz p=0.692146 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 545-669, + strand, RNAz p=0.910093 | |
| 550-669, + strand, RNAz p=0.692146 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 101-202, gnl|bosTau2|chr15 (53114271-53114372) | |
| 101-202, gnl|canFam2|chr6 (9576151-9576274) | |
| 101-202, gnl|danRer3|chr8 (37799606-37799723) | |
| 101-202, gnl|echTel1|scaffold_198216 (1711-1563) | |
| 101-202, gnl|fr1|chrUn (128323226-128323336) | |
| 101-202, gnl|galGal2|chr5 (3045049-3045194) | |
| 101-202, gnl|hg17|chr11 (59311060-59311209) | |
| 101-202, gnl|Hg17|chr11 (59311084-59311185) | |
| 101-202, gnl|loxAfr1|scaffold_62553 (192-44) | |
| 101-202, gnl|mm7|chr19 (11471996-11471849) | |
| 101-202, gnl|Mm7|chr19 (11471970-11471869) | |
| 101-202, gnl|monDom2|scaffold_33 (24176626-24176775) | |
| 101-202, gnl|oryCun1|scaffold_90127 (4594-4484) | |
| 101-202, gnl|panTro1|chr9 (60202596-60202745) | |
| 101-202, gnl|rheMac2|chr14 (14129568-14129419) | |
| 101-202, gnl|rn3|chr1 (214724330-214724183) | |
| 101-202, gnl|tetNig1|chr1 (7064167-7064291) | |
| 101-202, gnl|xenTro1|scaffold_690 (173661-173792) | |
| 343-457, gnl|bosTau2|chr15 (53119093-53119207) | |
| 343-457, gnl|canFam2|chr6 (9579847-9579964) | |
| 343-457, gnl|danRer3|chr19 (962465-962339) | |
| 343-457, gnl|dasNov1|scaffold_115477 (4187-4063) | |
| 343-457, gnl|echTel1|scaffold_311159 (41391-41267) | |
| 343-457, gnl|fr1|chrUn (128323884-128324005) | |
| 343-457, gnl|galGal2|chr5 (3046272-3046388) | |
| 343-457, gnl|hg17|chr11 (59316150-59316274) | |
| 343-457, gnl|Hg17|chr11 (59316153-59316267) | |
| 343-457, gnl|loxAfr1|scaffold_26866 (32534-32654) | |
| 343-457, gnl|mm7|chr19 (11466765-11466640) | |
| 343-457, gnl|Mm7|chr19 (11466759-11466645) | |
| 343-457, gnl|monDom2|scaffold_33 (24180708-24180831) | |
| 343-457, gnl|oryCun1|scaffold_90127 (4343-4232) | |
| 343-457, gnl|panTro1|chr9 (60207738-60207862) | |
| 343-457, gnl|rheMac2|chr14 (14124592-14124468) | |
| 343-457, gnl|rn3|chr1 (214719484-214719358) | |
| 343-457, gnl|tetNig1|chr1 (7064853-7064966) | |
| 343-457, gnl|xenTro1|scaffold_1762 (26437-26558) | |
| 528-669, gnl|bosTau2|chr15 (53120442-53120582) | |
| 528-669, gnl|canFam2|chr6 (9580813-9580896) | |
| 528-669, gnl|danRer3|chr19 (959165-959065) | |
| 528-669, gnl|dasNov1|scaffold_115477 (2942-2838) | |
| 528-669, gnl|echTel1|scaffold_178852 (7369-7446) | |
| 528-669, gnl|fr1|chrUn (128324240-128324339) | |
| 528-669, gnl|galGal2|chr5 (3046604-3046697) | |
| 528-669, gnl|hg17|chr11 (59317409-59317513) | |
| 528-669, gnl|Hg17|chr11 (59317428-59317568) | |
| 528-669, gnl|loxAfr1|scaffold_204344 (876-980) | |
| 528-669, gnl|mm7|chr19 (11465669-11465565) | |
| 528-669, gnl|Mm7|chr19 (11465648-11465509) | |
| 528-669, gnl|monDom2|scaffold_33 (24182413-24182506) | |
| 528-669, gnl|oryCun1|scaffold_191446 (20280-20187) | |
| 528-669, gnl|panTro1|chr9 (60209067-60209171) | |
| 528-669, gnl|rheMac2|chr14 (14123367-14123263) | |
| 528-669, gnl|rn3|chr1 (214718353-214718249) | |
| 528-669, gnl|tetNig1|chr1 (7065396-7065495) | |
| 528-669, gnl|xenTro1|scaffold_1762 (30377-30460) | |
| 773-1208, gnl|bosTau2|chr15 (53123927-53124339) | |
| 773-1208, gnl|Hg17|chr11 (59321330-59321781) | |
| 773-1208, gnl|Mm7|chr19 (11461805-11461133) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-202, gnl|bosTau2|chr15 (53114271-53114372) | |
| 101-202, gnl|canFam2|chr6 (9576151-9576274) | |
| 101-202, gnl|danRer3|chr8 (37799606-37799723) | |
| 101-202, gnl|echTel1|scaffold_198216 (1711-1563) | |
| 101-202, gnl|fr1|chrUn (128323226-128323336) | |
| 101-202, gnl|galGal2|chr5 (3045049-3045194) | |
| 101-202, gnl|hg17|chr11 (59311060-59311209) | |
| 101-202, gnl|Hg17|chr11 (59311084-59311185) | |
| 101-202, gnl|loxAfr1|scaffold_62553 (192-44) | |
| 101-202, gnl|mm7|chr19 (11471996-11471849) | |
| 101-202, gnl|Mm7|chr19 (11471970-11471869) | |
| 101-202, gnl|monDom2|scaffold_33 (24176626-24176775) | |
| 101-202, gnl|oryCun1|scaffold_90127 (4594-4484) | |
| 101-202, gnl|panTro1|chr9 (60202596-60202745) | |
| 101-202, gnl|rheMac2|chr14 (14129568-14129419) | |
| 101-202, gnl|rn3|chr1 (214724330-214724183) | |
| 101-202, gnl|tetNig1|chr1 (7064167-7064291) | |
| 101-202, gnl|xenTro1|scaffold_690 (173661-173792) | |
| 343-457, gnl|bosTau2|chr15 (53119093-53119207) | |
| 343-457, gnl|canFam2|chr6 (9579847-9579964) | |
| 343-457, gnl|danRer3|chr19 (962465-962339) | |
| 343-457, gnl|dasNov1|scaffold_115477 (4187-4063) | |
| 343-457, gnl|echTel1|scaffold_311159 (41391-41267) | |
| 343-457, gnl|fr1|chrUn (128323884-128324005) | |
| 343-457, gnl|galGal2|chr5 (3046272-3046388) | |
| 343-457, gnl|hg17|chr11 (59316150-59316274) | |
| 343-457, gnl|Hg17|chr11 (59316153-59316267) | |
| 343-457, gnl|loxAfr1|scaffold_26866 (32534-32654) | |
| 343-457, gnl|mm7|chr19 (11466765-11466640) | |
| 343-457, gnl|Mm7|chr19 (11466759-11466645) | |
| 343-457, gnl|monDom2|scaffold_33 (24180708-24180831) | |
| 343-457, gnl|oryCun1|scaffold_90127 (4343-4232) | |
| 343-457, gnl|panTro1|chr9 (60207738-60207862) | |
| 343-457, gnl|rheMac2|chr14 (14124592-14124468) | |
| 343-457, gnl|rn3|chr1 (214719484-214719358) | |
| 343-457, gnl|tetNig1|chr1 (7064853-7064966) | |
| 343-457, gnl|xenTro1|scaffold_1762 (26437-26558) | |
| 528-669, gnl|bosTau2|chr15 (53120442-53120582) | |
| 528-669, gnl|canFam2|chr6 (9580813-9580896) | |
| 528-669, gnl|danRer3|chr19 (959165-959065) | |
| 528-669, gnl|dasNov1|scaffold_115477 (2942-2838) | |
| 528-669, gnl|echTel1|scaffold_178852 (7369-7446) | |
| 528-669, gnl|fr1|chrUn (128324240-128324339) | |
| 528-669, gnl|galGal2|chr5 (3046604-3046697) | |
| 528-669, gnl|hg17|chr11 (59317409-59317513) | |
| 528-669, gnl|Hg17|chr11 (59317428-59317568) | |
| 528-669, gnl|loxAfr1|scaffold_204344 (876-980) | |
| 528-669, gnl|mm7|chr19 (11465669-11465565) | |
| 528-669, gnl|Mm7|chr19 (11465648-11465509) | |
| 528-669, gnl|monDom2|scaffold_33 (24182413-24182506) | |
| 528-669, gnl|oryCun1|scaffold_191446 (20280-20187) | |
| 528-669, gnl|panTro1|chr9 (60209067-60209171) | |
| 528-669, gnl|rheMac2|chr14 (14123367-14123263) | |
| 528-669, gnl|rn3|chr1 (214718353-214718249) | |
| 528-669, gnl|tetNig1|chr1 (7065396-7065495) | |
| 528-669, gnl|xenTro1|scaffold_1762 (30377-30460) | |
| 773-1208, gnl|bosTau2|chr15 (53123927-53124339) | |
| 773-1208, gnl|Hg17|chr11 (59321330-59321781) | |
| 773-1208, gnl|Mm7|chr19 (11461805-11461133) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |