Non-Coding RNA Search

Ss1.1-Pig2-39F21.5

Sequence:


               
               GTAAAATATTAGGGTTTCCCCCCCCTAAAGTCGTGCTTCTGAAGTGTTGGTTTGCATGAG
AACCACCTGGGGCACTTGTCGAAGATTTACTCAATTGGGGACCACCCCAAACCTAGTCAC
TCAATCTGAGGATGGAGCCCCGGAATCTGCCTTTTTAAAAAGGCTGCCACCCTCCCCGGG
TGGTTCTGGTTCAGGAAGTCCTGAGGCCGAAAGGGACACACAGTCCTGCCAAGCAGTGGT
CCACAGGTCTCCTGCTCCTCTGCTTCCTCAGAGTGTTTTGGAAAACCTTGTAGCCCCTCC
CACGTTAACATCCCCAATTTCTCATGGGAAGTTTGAGTTGCCAAAGTATATACTTTCTGG
TGTCATGTAAATATTGATATTTTAAAATAAAACTGTTACATCACTCTTTTAAACATATTC
AGTATAATTGAAATACATAGCAATTTGACATTCATCATCCATTTACAAAAATAAATTGTT
TAGTAGTTGGAAATATCCATTTTCCTCATATGCGTATTTCCTACCGCTTTCAGCAAAGTA
TGCTATCATGTTTTTATGCTGGAAAATTTTTTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAAATATTAGGGTTTCCCCCCCCTAAAGTCGTGCTTCTGAAGTGTTGGTTTGCATGAG
AACCACCTGGGGCACTTGTCGAAGATTTACTCAATTGGGGACCACCCCAAACCTAGTCAC
TCAATCTGAGGATGGAGCCCCGGAATCTGCCTTTTTAAAAAGGCTGCCACCCTCCCCGGG
TGGTTCTGGTTCAGGAAGTCCTGAGGCCGAAAGGGACACACAGTCCTGCCAAGCAGTGGT
CCACAGGTCTCCTGCTCCTCTGCTTCCTCAGAGTGTTTTGGAAAACCTTGTAGCCCCTCC
CACGTTAACATCCCCAATTTCTCATGGGAAGTTTGAGTTGCCAAAGTATATACTTTCTGG
TGTCATGTAAATATTGATATTTTAAAATAAAACTGTTACATCACTCTTTTAAACATATTC
AGTATAATTGAAATACATAGCAATTTGACATTCATCATCCATTTACAAAAATAAATTGTT
TAGTAGTTGGAAATATCCATTTTCCTCATATGCGTATTTCCTACCGCTTTCAGCAAAGTA
TGCTATCATGTTTTTATGCTGGAAAATTTTTTCACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               20-171, - strand, RNAz p=0.919619
               

               
               441-550, - strand, RNAz p=0.583832

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-171, - strand, RNAz p=0.919619
               

               
               441-550, - strand, RNAz p=0.583832

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               20-558, gnl|bosTau2|chr13 (54287719-54287176)
               

               
               20-558, gnl|canFam2|chr16 (10526058-10525696)
               

               
               20-558, gnl|canFam2|chr16 (10526058-10525553)
               

               
               20-558, gnl|dasNov1|scaffold_165823 (3567-3952)
               

               
               20-558, gnl|dasNov1|scaffold_165823 (3566-4036)
               

               
               20-558, gnl|hg17|chr7 (140806468-140807050)
               

               
               20-558, gnl|Hg17|chr7 (140806482-140807050)
               

               
               20-558, gnl|hg17|chrY (15190937-15191312)
               

               
               20-558, gnl|loxAfr1|scaffold_24223 (34179-33809)
               

               
               20-558, gnl|loxAfr1|scaffold_24223 (34179-33636)
               

               
               20-558, gnl|Mm7|chr6 (40326432-40326939)
               

               
               20-558, gnl|oryCun1|scaffold_177439 (6549-6877)
               

               
               20-558, gnl|oryCun1|scaffold_177439 (6549-7017)
               

               
               20-558, gnl|panTro1|chr6 (143562501-143563090)
               

               
               20-558, gnl|panTro1|chrUn_random (59830832-59831209)
               

               
               20-558, gnl|rheMac2|chr3 (179128990-179129549)
               

               
               20-558, gnl|rheMac2|chrX (130354656-130354277)
               

               
               20-558, gnl|rn3|chr4 (68229690-68230013)
               

               
               20-558, gnl|rn3|chr4 (68229690-68230158)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-558, gnl|bosTau2|chr13 (54287719-54287176)
               

               
               20-558, gnl|canFam2|chr16 (10526058-10525696)
               

               
               20-558, gnl|canFam2|chr16 (10526058-10525553)
               

               
               20-558, gnl|dasNov1|scaffold_165823 (3567-3952)
               

               
               20-558, gnl|dasNov1|scaffold_165823 (3566-4036)
               

               
               20-558, gnl|hg17|chr7 (140806468-140807050)
               

               
               20-558, gnl|Hg17|chr7 (140806482-140807050)
               

               
               20-558, gnl|hg17|chrY (15190937-15191312)
               

               
               20-558, gnl|loxAfr1|scaffold_24223 (34179-33809)
               

               
               20-558, gnl|loxAfr1|scaffold_24223 (34179-33636)
               

               
               20-558, gnl|Mm7|chr6 (40326432-40326939)
               

               
               20-558, gnl|oryCun1|scaffold_177439 (6549-6877)
               

               
               20-558, gnl|oryCun1|scaffold_177439 (6549-7017)
               

               
               20-558, gnl|panTro1|chr6 (143562501-143563090)
               

               
               20-558, gnl|panTro1|chrUn_random (59830832-59831209)
               

               
               20-558, gnl|rheMac2|chr3 (179128990-179129549)
               

               
               20-558, gnl|rheMac2|chrX (130354656-130354277)
               

               
               20-558, gnl|rn3|chr4 (68229690-68230013)
               

               
               20-558, gnl|rn3|chr4 (68229690-68230158)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               mga (0.160205)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               pgl (0.118483)

	20-171, - strand, RNAz p=0.919619
	441-550, - strand, RNAz p=0.583832

	20-558, gnl\|bosTau2\|chr13 (54287719-54287176)
	20-558, gnl\|canFam2\|chr16 (10526058-10525696)
	20-558, gnl\|canFam2\|chr16 (10526058-10525553)
	20-558, gnl\|dasNov1\|scaffold_165823 (3567-3952)
	20-558, gnl\|dasNov1\|scaffold_165823 (3566-4036)
	20-558, gnl\|hg17\|chr7 (140806468-140807050)
	20-558, gnl\|Hg17\|chr7 (140806482-140807050)
	20-558, gnl\|hg17\|chrY (15190937-15191312)
	20-558, gnl\|loxAfr1\|scaffold_24223 (34179-33809)
	20-558, gnl\|loxAfr1\|scaffold_24223 (34179-33636)
	20-558, gnl\|Mm7\|chr6 (40326432-40326939)
	20-558, gnl\|oryCun1\|scaffold_177439 (6549-6877)
	20-558, gnl\|oryCun1\|scaffold_177439 (6549-7017)
	20-558, gnl\|panTro1\|chr6 (143562501-143563090)
	20-558, gnl\|panTro1\|chrUn_random (59830832-59831209)
	20-558, gnl\|rheMac2\|chr3 (179128990-179129549)
	20-558, gnl\|rheMac2\|chrX (130354656-130354277)
	20-558, gnl\|rn3\|chr4 (68229690-68230013)
	20-558, gnl\|rn3\|chr4 (68229690-68230158)