Non-Coding RNA Search

Ss1.1-Pig2-39I23.5

Sequence:


               
               GCTCATGGGTTTATACCATAAATTTATGCACCACTTAAATTCAGGGCTACAGAGTTTTTA
TTTAATTTATTTGACTTATGTCTCTTAATTCTCATTCTGAGATTTCCAATTTTCAGCGCC
AGAAACGATGGCCTGTCATATAATTAGTCATTAGCATAATCCCACCATATCCACCCAAAA
GTCTCAGAATATCAACATTGGTACCAGTAACATGGTAACTGAAAATAATTGAAGTTTTTT
TTAGTGGTGTGGAGGATTCTTTAAAATACATCCCAGGAAGTTCTCGTCGTGGCTCAGCAG
AGGCAAGTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCATGGGTTTATACCATAAATTTATGCACCACTTAAATTCAGGGCTACAGAGTTTTTA
TTTAATTTATTTGACTTATGTCTCTTAATTCTCATTCTGAGATTTCCAATTTTCAGCGCC
AGAAACGATGGCCTGTCATATAATTAGTCATTAGCATAATCCCACCATATCCACCCAAAA
GTCTCAGAATATCAACATTGGTACCAGTAACATGGTAACTGAAAATAATTGAAGTTTTTT
TTAGTGGTGTGGAGGATTCTTTAAAATACATCCCAGGAAGTTCTCGTCGTGGCTCAGCAG
AGGCAAGTCTGA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               3-275, gnl|bosTau2|chr3 (3874190-3874469)
               

               
               3-275, gnl|canFam2|chr38 (20635015-20634749)
               

               
               3-275, gnl|dasNov1|scaffold_18907 (7036-7241)
               

               
               3-275, gnl|hg17|chr1 (162424312-162424547)
               

               
               3-275, gnl|Hg17|chr1 (162424641-162424366)
               

               
               3-275, gnl|loxAfr1|scaffold_11385 (58696-58482)
               

               
               3-275, gnl|mm7|chr1 (167307068-167306759)
               

               
               3-275, gnl|oryCun1|scaffold_150678 (9295-9530)
               

               
               3-275, gnl|panTro1|chr1 (144672306-144672541)
               

               
               3-275, gnl|rheMac2|chr1 (195571419-195571649)
               

               
               3-275, gnl|rn3|chr13 (83010417-83010205)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-275, gnl|bosTau2|chr3 (3874190-3874469)
               

               
               3-275, gnl|canFam2|chr38 (20635015-20634749)
               

               
               3-275, gnl|dasNov1|scaffold_18907 (7036-7241)
               

               
               3-275, gnl|hg17|chr1 (162424312-162424547)
               

               
               3-275, gnl|Hg17|chr1 (162424641-162424366)
               

               
               3-275, gnl|loxAfr1|scaffold_11385 (58696-58482)
               

               
               3-275, gnl|mm7|chr1 (167307068-167306759)
               

               
               3-275, gnl|oryCun1|scaffold_150678 (9295-9530)
               

               
               3-275, gnl|panTro1|chr1 (144672306-144672541)
               

               
               3-275, gnl|rheMac2|chr1 (195571419-195571649)
               

               
               3-275, gnl|rn3|chr13 (83010417-83010205)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               ebs (0.118301)

	3-275, gnl\|bosTau2\|chr3 (3874190-3874469)
	3-275, gnl\|canFam2\|chr38 (20635015-20634749)
	3-275, gnl\|dasNov1\|scaffold_18907 (7036-7241)
	3-275, gnl\|hg17\|chr1 (162424312-162424547)
	3-275, gnl\|Hg17\|chr1 (162424641-162424366)
	3-275, gnl\|loxAfr1\|scaffold_11385 (58696-58482)
	3-275, gnl\|mm7\|chr1 (167307068-167306759)
	3-275, gnl\|oryCun1\|scaffold_150678 (9295-9530)
	3-275, gnl\|panTro1\|chr1 (144672306-144672541)
	3-275, gnl\|rheMac2\|chr1 (195571419-195571649)
	3-275, gnl\|rn3\|chr13 (83010417-83010205)