Ss1.1-Pig2-39O14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGAAGCCACCGAGAAGTTCAGAAGCAACCTCAAGACCATGTACTCCGTCCCTAACGGGA AGATCCACGTTGGCTACAAGGACCTGATGGAGAACTACCAGATCATGGTGAGCAACCTGG CGGCCGAGCATGGCGAGAAGGACCCCAACCTGGTCCTCAACACCTTCCAGTCCCTGCTGG ATGAGTTCACCCGCAGGCACACCAAGAACGACTTCGAGCCTCCCAAGCAGAGCAAATCTC AGAAGAAGAAGCGGAAGCAGGAACGCGCTGTCCAGCAGCACAACGGGCATGTGTTCGCCA GCTACCAAGTGAGCATCCCACAGTCGTGCGAGCAGTGCCTCTCCTATATCTGGCTCATGG ACAAGGCCCTGCTCTGCAGTGTGTGCAAGATGACCTGCCACAAGAAGTGTGTGCACAAGA TTCAGACCTACTGCTCTTACACAAGCGGGAAGCAGATCGAGCCAGGCACTGAGCCCGGCC ACTTTGGAGTGTGCGTGGACAGCCTGACCAGCGACAAGGTCTCAGTGCCCATCGTGCTGG AGAAGCTTTTGGAACATGTGGAGATGCACGGCTTGTATACTGAGGGCCTCTATCGCAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGAAGCCACCGAGAAGTTCAGAAGCAACCTCAAGACCATGTACTCCGTCCCTAACGGGA AGATCCACGTTGGCTACAAGGACCTGATGGAGAACTACCAGATCATGGTGAGCAACCTGG CGGCCGAGCATGGCGAGAAGGACCCCAACCTGGTCCTCAACACCTTCCAGTCCCTGCTGG ATGAGTTCACCCGCAGGCACACCAAGAACGACTTCGAGCCTCCCAAGCAGAGCAAATCTC AGAAGAAGAAGCGGAAGCAGGAACGCGCTGTCCAGCAGCACAACGGGCATGTGTTCGCCA GCTACCAAGTGAGCATCCCACAGTCGTGCGAGCAGTGCCTCTCCTATATCTGGCTCATGG ACAAGGCCCTGCTCTGCAGTGTGTGCAAGATGACCTGCCACAAGAAGTGTGTGCACAAGA TTCAGACCTACTGCTCTTACACAAGCGGGAAGCAGATCGAGCCAGGCACTGAGCCCGGCC ACTTTGGAGTGTGCGTGGACAGCCTGACCAGCGACAAGGTCTCAGTGCCCATCGTGCTGG AGAAGCTTTTGGAACATGTGGAGATGCACGGCTTGTATACTGAGGGCCTCTATCGCAAGT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 54-212, + strand, RNAz p=0.548545 | |
| 76-195, - strand, RNAz p=0.781168 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 54-212, + strand, RNAz p=0.548545 | |
| 76-195, - strand, RNAz p=0.781168 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 54-227, gnl|bosTau2|chr7 (2862291-2862118) | |
| 54-227, gnl|canFam2|chr20 (48523249-48523050) | |
| 54-227, gnl|danRer3|chr19 (19712946-19712761) | |
| 54-227, gnl|echTel1|scaffold_296104 (6678-6493) | |
| 54-227, gnl|fr1|chrUn (73939233-73939411) | |
| 54-227, gnl|galGal2|chr28 (3460599-3460423) | |
| 54-227, gnl|hg17|chr19 (17173925-17174142) | |
| 54-227, gnl|Hg17|chr19 (17173939-17174112) | |
| 54-227, gnl|loxAfr1|scaffold_23728 (26739-26948) | |
| 54-227, gnl|mm7|chr8 (69821150-69821360) | |
| 54-227, gnl|Mm7|chr8 (69821167-69821340) | |
| 54-227, gnl|monDom2|scaffold_100 (4141077-4141288) | |
| 54-227, gnl|panTro1|chr20 (17866689-17866906) | |
| 54-227, gnl|rheMac2|chr19 (16750813-16751030) | |
| 54-227, gnl|rn3|chr16 (18511936-18512146) | |
| 54-227, gnl|tetNig1|chr1 (11476267-11476444) | |
| 270-379, gnl|bosTau2|chr7 (2861791-2861682) | |
| 270-379, gnl|canFam2|chr20 (48522745-48522664) | |
| 270-379, gnl|danRer3|chr2 (34707420-34707502) | |
| 270-379, gnl|echTel1|scaffold_296104 (6174-6094) | |
| 270-379, gnl|fr1|chrUn (73939636-73939690) | |
| 270-379, gnl|galGal2|chr28 (3459443-3459362) | |
| 270-379, gnl|hg17|chr19 (17174954-17175035) | |
| 270-379, gnl|Hg17|chr19 (17174956-17175065) | |
| 270-379, gnl|loxAfr1|scaffold_23728 (27318-27399) | |
| 270-379, gnl|mm7|chr8 (69821919-69822000) | |
| 270-379, gnl|Mm7|chr8 (69821921-69822030) | |
| 270-379, gnl|monDom2|scaffold_100 (4145241-4145321) | |
| 270-379, gnl|oryCun1|scaffold_116576 (950-1031) | |
| 270-379, gnl|panTro1|chr20 (17867719-17867799) | |
| 270-379, gnl|rheMac2|chr19 (16751793-16751874) | |
| 270-379, gnl|rn3|chr16 (18512766-18512847) | |
| 270-379, gnl|tetNig1|chr1 (11476676-11476725) | |
| 270-379, gnl|xenTro1|scaffold_1952 (27392-27328) | |
| 453-600, gnl|bosTau2|chr7 (2860304-2860157) | |
| 453-600, gnl|Hg17|chr19 (17177766-17177913) | |
| 453-600, gnl|Mm7|chr8 (69822897-69823044) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-227, gnl|bosTau2|chr7 (2862291-2862118) | |
| 54-227, gnl|canFam2|chr20 (48523249-48523050) | |
| 54-227, gnl|danRer3|chr19 (19712946-19712761) | |
| 54-227, gnl|echTel1|scaffold_296104 (6678-6493) | |
| 54-227, gnl|fr1|chrUn (73939233-73939411) | |
| 54-227, gnl|galGal2|chr28 (3460599-3460423) | |
| 54-227, gnl|hg17|chr19 (17173925-17174142) | |
| 54-227, gnl|Hg17|chr19 (17173939-17174112) | |
| 54-227, gnl|loxAfr1|scaffold_23728 (26739-26948) | |
| 54-227, gnl|mm7|chr8 (69821150-69821360) | |
| 54-227, gnl|Mm7|chr8 (69821167-69821340) | |
| 54-227, gnl|monDom2|scaffold_100 (4141077-4141288) | |
| 54-227, gnl|panTro1|chr20 (17866689-17866906) | |
| 54-227, gnl|rheMac2|chr19 (16750813-16751030) | |
| 54-227, gnl|rn3|chr16 (18511936-18512146) | |
| 54-227, gnl|tetNig1|chr1 (11476267-11476444) | |
| 270-379, gnl|bosTau2|chr7 (2861791-2861682) | |
| 270-379, gnl|canFam2|chr20 (48522745-48522664) | |
| 270-379, gnl|danRer3|chr2 (34707420-34707502) | |
| 270-379, gnl|echTel1|scaffold_296104 (6174-6094) | |
| 270-379, gnl|fr1|chrUn (73939636-73939690) | |
| 270-379, gnl|galGal2|chr28 (3459443-3459362) | |
| 270-379, gnl|hg17|chr19 (17174954-17175035) | |
| 270-379, gnl|Hg17|chr19 (17174956-17175065) | |
| 270-379, gnl|loxAfr1|scaffold_23728 (27318-27399) | |
| 270-379, gnl|mm7|chr8 (69821919-69822000) | |
| 270-379, gnl|Mm7|chr8 (69821921-69822030) | |
| 270-379, gnl|monDom2|scaffold_100 (4145241-4145321) | |
| 270-379, gnl|oryCun1|scaffold_116576 (950-1031) | |
| 270-379, gnl|panTro1|chr20 (17867719-17867799) | |
| 270-379, gnl|rheMac2|chr19 (16751793-16751874) | |
| 270-379, gnl|rn3|chr16 (18512766-18512847) | |
| 270-379, gnl|tetNig1|chr1 (11476676-11476725) | |
| 270-379, gnl|xenTro1|scaffold_1952 (27392-27328) | |
| 453-600, gnl|bosTau2|chr7 (2860304-2860157) | |
| 453-600, gnl|Hg17|chr19 (17177766-17177913) | |
| 453-600, gnl|Mm7|chr8 (69822897-69823044) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |