Non-Coding RNA Search

Ss1.1-Pig2-3F05.5

Sequence:


               
               ATCTTACACCAGCAGGTGAAGTGCATCATCACAGAGGAGAAGGTGTGCATGGTGTGTAAG
AAGAAAATTGGGAATAGTGCATTTGCAAGATACCCCAACGGAGTGGTCGTGCACTACTTC
TGCTCCAAAGAGGTCAACCCAGCCGACACCTGAGTCCAGCAAGCCGAGGATTTAAGCAGT
GGACAGCTTGGCTATCCCAGAGCGGGGATGGGCCCCAGTCCTGGAAATCGGGGGCTGCTG
CCACCCCCTGGTGTCTCCCCACTTGGACACTACTGGCTACCTTGCGCCCTGGAACATCTC
TGAATTAATCAGACTCATGTTCTGGCATTGCCAGATTTTTAATAGAAAAAGAGATTAGTT
ACACCTTATACACCATTATGTTACAGACAATTCTGGAGAATTTAACACCTGCTGGGACAG
GAGGCGGTGGGAATGGGTGCTGTCCTGCCATTGCATTCCAATCACCTGAGTGAGGAAGCT
GTCTCAAGTGTTTGTAACCCCAGGGTTGTTTATTCAGAGTTTTCTATTAAGATACATGCA
AGACTTCACCGGAGCCCTCAGCTCGGCTTCCTGGAGTCCCATGAGGAAAGCAGTGCCAGA
GCTCTTCTGGCTGCAAAAGCCCAATGGCTCATCCTCTGGGTAATGCTGGTCACTTTGTAG
TCACTGTCCCTGTGTCCTCCCCACCAGCCTCGCCACCTGACTTTTTATTTTCCGGTCTCC
TCTTTCTATTTATTTTCTTCCTCTATCCCTCCCGACACTGCTCTACCCAGGCTTTCTCTC
CCATTTTCCTGACACCGGGAATAACTAATAAATTTAAACAAGGTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTACACCAGCAGGTGAAGTGCATCATCACAGAGGAGAAGGTGTGCATGGTGTGTAAG
AAGAAAATTGGGAATAGTGCATTTGCAAGATACCCCAACGGAGTGGTCGTGCACTACTTC
TGCTCCAAAGAGGTCAACCCAGCCGACACCTGAGTCCAGCAAGCCGAGGATTTAAGCAGT
GGACAGCTTGGCTATCCCAGAGCGGGGATGGGCCCCAGTCCTGGAAATCGGGGGCTGCTG
CCACCCCCTGGTGTCTCCCCACTTGGACACTACTGGCTACCTTGCGCCCTGGAACATCTC
TGAATTAATCAGACTCATGTTCTGGCATTGCCAGATTTTTAATAGAAAAAGAGATTAGTT
ACACCTTATACACCATTATGTTACAGACAATTCTGGAGAATTTAACACCTGCTGGGACAG
GAGGCGGTGGGAATGGGTGCTGTCCTGCCATTGCATTCCAATCACCTGAGTGAGGAAGCT
GTCTCAAGTGTTTGTAACCCCAGGGTTGTTTATTCAGAGTTTTCTATTAAGATACATGCA
AGACTTCACCGGAGCCCTCAGCTCGGCTTCCTGGAGTCCCATGAGGAAAGCAGTGCCAGA
GCTCTTCTGGCTGCAAAAGCCCAATGGCTCATCCTCTGGGTAATGCTGGTCACTTTGTAG
TCACTGTCCCTGTGTCCTCCCCACCAGCCTCGCCACCTGACTTTTTATTTTCCGGTCTCC
TCTTTCTATTTATTTTCTTCCTCTATCCCTCCCGACACTGCTCTACCCAGGCTTTCTCTC
CCATTTTCCTGACACCGGGAATAACTAATAAATTTAAACAAGGTCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-433, + strand, RNAz p=0.923803

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-433, + strand, RNAz p=0.923803

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015289, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015289, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-802, gnl|bosTau2|chr10 (17022175-17021455)
               

               
               76-802, gnl|Hg17|chr15 (40240321-40239625)
               

               
               76-802, gnl|Mm7|chr2 (120058960-120058307)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-802, gnl|bosTau2|chr10 (17022175-17021455)
               

               
               76-802, gnl|Hg17|chr15 (40240321-40239625)
               

               
               76-802, gnl|Mm7|chr2 (120058960-120058307)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	76-802, gnl\|bosTau2\|chr10 (17022175-17021455)
	76-802, gnl\|Hg17\|chr15 (40240321-40239625)
	76-802, gnl\|Mm7\|chr2 (120058960-120058307)