Ss1.1-Pig2-3P11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTTATGGATCTGCAGCAAGTAGGCTCCGGGGTCCCAGCTGGTGCCTCGGTCCCGCCC TTCAATGCCTTTCCCCATGCTGCCTCCGTGTACGGGCAGTTCACGGGCCAGGCCCTCCTC TCAGGGCGAGAGATGGTGGGGCCCACGCTGCCTGGATACCCACCCCACATCCCTACCAGT GGACAGGGCAGCTATGCCTCTTCTGCCATCGCAGGCATGGTGGCAGGAAGCGAGTACTCT GGCAACACCTACGGCCACACCCCCTACTCCTCCTACAGCGAGGCCTGGCGCTTCCCCAAC TCCAGCTTGCTGAGTTCCCCATATTATTACAGTTCCGCATCAAGGGCGAGTGCACCGCCC ACCACCGCCACGGCCTTTGACCATCTGTAGTTGCCATGGGGACAGTGGGAGCCACCGAGC CACAGGAGGACTCAGTCTGGGACAGGCCCCAGAGAGTCACACAAAGGAATCTTTATTTAT TACATGAAAAATAACCACAAATCCAGCATCGCGGCTCACTCCCTGTGTGGTTGATTTAAT GAACCGTGAGAGACAGGACGACTCTNGAGAAGGCCGCACTGTCCTCCAAGACTCCTTAAT GAGGGCCCGGGAGTCCCAGGAAGAGAGAACCCCCACCCCCCCCACCCCCGTTCCAAAGAG ACAGAATTGGAGGAGAGATGTGGAGAGAAGAGGGGACAGCAAGTAGCTTGGGGGGGATGG CACAGGGACCCACGACAACAACGGGCTTGGGGGCCACACAGGCGCTTTTGTGGCTCCACC ATCGACCCGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTTATGGATCTGCAGCAAGTAGGCTCCGGGGTCCCAGCTGGTGCCTCGGTCCCGCCC TTCAATGCCTTTCCCCATGCTGCCTCCGTGTACGGGCAGTTCACGGGCCAGGCCCTCCTC TCAGGGCGAGAGATGGTGGGGCCCACGCTGCCTGGATACCCACCCCACATCCCTACCAGT GGACAGGGCAGCTATGCCTCTTCTGCCATCGCAGGCATGGTGGCAGGAAGCGAGTACTCT GGCAACACCTACGGCCACACCCCCTACTCCTCCTACAGCGAGGCCTGGCGCTTCCCCAAC TCCAGCTTGCTGAGTTCCCCATATTATTACAGTTCCGCATCAAGGGCGAGTGCACCGCCC ACCACCGCCACGGCCTTTGACCATCTGTAGTTGCCATGGGGACAGTGGGAGCCACCGAGC CACAGGAGGACTCAGTCTGGGACAGGCCCCAGAGAGTCACACAAAGGAATCTTTATTTAT TACATGAAAAATAACCACAAATCCAGCATCGCGGCTCACTCCCTGTGTGGTTGATTTAAT GAACCGTGAGAGACAGGACGACTCTNGAGAAGGCCGCACTGTCCTCCAAGACTCCTTAAT GAGGGCCCGGGAGTCCCAGGAAGAGAGAACCCCCACCCCCCCCACCCCCGTTCCAAAGAG ACAGAATTGGAGGAGAGATGTGGAGAGAAGAGGGGACAGCAAGTAGCTTGGGGGGGATGG CACAGGGACCCACGACAACAACGGGCTTGGGGGCCACACAGGCGCTTTTGTGGCTCCACC ATCGACCCGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 469-665, - strand, RNAz p=0.99831 | |
| 554-663, + strand, RNAz p=0.575423 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 469-665, - strand, RNAz p=0.99831 | |
| 554-663, + strand, RNAz p=0.575423 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 4-125, gnl|bosTau2|chr11 (33482601-33482722) | |
| 4-125, gnl|canFam2|chr17 (40433169-40433374) | |
| 4-125, gnl|dasNov1|scaffold_77719 (3572-3378) | |
| 4-125, gnl|echTel1|scaffold_298798 (1267-1469) | |
| 4-125, gnl|fr1|chrUn (146715038-146714818) | |
| 4-125, gnl|galGal2|chrUn (18917388-18917608) | |
| 4-125, gnl|hg17|chr2 (113709200-113709384) | |
| 4-125, gnl|Hg17|chr2 (113709304-113709201) | |
| 4-125, gnl|mm7|chr2 (24443072-24443274) | |
| 4-125, gnl|Mm7|chr2 (24443194-24443073) | |
| 4-125, gnl|monDom2|scaffold_63 (5783990-5783788) | |
| 4-125, gnl|oryCun1|scaffold_208345 (55129-54944) | |
| 4-125, gnl|panTro1|chr12 (116779099-116779301) | |
| 4-125, gnl|rheMac2|chr13 (112604848-112605050) | |
| 4-125, gnl|rn3|chr3 (2686350-2686552) | |
| 4-125, gnl|tetNig1|chr4 (2558393-2558178) | |
| 4-125, gnl|xenTro1|scaffold_217 (712946-712759) | |
| 314-792, gnl|bosTau2|chr11 (33498930-33499376) | |
| 314-792, gnl|canFam2|chr17 (40418030-40418469) | |
| 314-792, gnl|echTel1|scaffold_308826 (124747-124298) | |
| 314-792, gnl|hg17|chr2 (113691811-113692286) | |
| 314-792, gnl|Hg17|chr2 (113692417-113691932) | |
| 314-792, gnl|loxAfr1|scaffold_33966 (14287-13829) | |
| 314-792, gnl|mm7|chr2 (24428362-24428800) | |
| 314-792, gnl|Mm7|chr2 (24428935-24428471) | |
| 314-792, gnl|monDom2|scaffold_63 (5802283-5801795) | |
| 314-792, gnl|panTro1|chr12 (116761698-116762173) | |
| 314-792, gnl|rheMac2|chr13 (112588118-112588595) | |
| 314-792, gnl|rn3|chr3 (2671949-2672370) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-125, gnl|bosTau2|chr11 (33482601-33482722) | |
| 4-125, gnl|canFam2|chr17 (40433169-40433374) | |
| 4-125, gnl|dasNov1|scaffold_77719 (3572-3378) | |
| 4-125, gnl|echTel1|scaffold_298798 (1267-1469) | |
| 4-125, gnl|fr1|chrUn (146715038-146714818) | |
| 4-125, gnl|galGal2|chrUn (18917388-18917608) | |
| 4-125, gnl|hg17|chr2 (113709200-113709384) | |
| 4-125, gnl|Hg17|chr2 (113709304-113709201) | |
| 4-125, gnl|mm7|chr2 (24443072-24443274) | |
| 4-125, gnl|Mm7|chr2 (24443194-24443073) | |
| 4-125, gnl|monDom2|scaffold_63 (5783990-5783788) | |
| 4-125, gnl|oryCun1|scaffold_208345 (55129-54944) | |
| 4-125, gnl|panTro1|chr12 (116779099-116779301) | |
| 4-125, gnl|rheMac2|chr13 (112604848-112605050) | |
| 4-125, gnl|rn3|chr3 (2686350-2686552) | |
| 4-125, gnl|tetNig1|chr4 (2558393-2558178) | |
| 4-125, gnl|xenTro1|scaffold_217 (712946-712759) | |
| 314-792, gnl|bosTau2|chr11 (33498930-33499376) | |
| 314-792, gnl|canFam2|chr17 (40418030-40418469) | |
| 314-792, gnl|echTel1|scaffold_308826 (124747-124298) | |
| 314-792, gnl|hg17|chr2 (113691811-113692286) | |
| 314-792, gnl|Hg17|chr2 (113692417-113691932) | |
| 314-792, gnl|loxAfr1|scaffold_33966 (14287-13829) | |
| 314-792, gnl|mm7|chr2 (24428362-24428800) | |
| 314-792, gnl|Mm7|chr2 (24428935-24428471) | |
| 314-792, gnl|monDom2|scaffold_63 (5802283-5801795) | |
| 314-792, gnl|panTro1|chr12 (116761698-116762173) | |
| 314-792, gnl|rheMac2|chr13 (112588118-112588595) | |
| 314-792, gnl|rn3|chr3 (2671949-2672370) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |