Non-Coding RNA Search

Ss1.1-Pig2-40G22.5

Sequence:


               
               GAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCAGGGC
GGTGACTAAGATGGTGGAGGAGCATTTCTACTGGACCTTAGCTTATTGCCAGTGGGTGGA
CAATCTCAATGAGACCCGGAAGATGCTCTCTCTTAGTGGTGGCGGTCCCTTCAGTAACCT
GCTGAGGTGGGTCGTGTGCCACATAACGAAAGGAATCGTGAAACGCGAGATGCACGGCCA
CGGCATTGGCCGCTTCTCAGAGGAAGAGATTTACATGCTGATGGAGAAGGACATGCGGTC
GTTAGCGGGGCTTCTGGGTGATAAGAAGTACATCATGGGGCCCAAGCTTTCCACTCTCGA
TGCCACTGTGTTTGGACACTTGGCACAGGCAATGTGGACCTTACCTGGGACGAGACCTGA
GCGGCTGATAAAAGGTGAGCTGATCAATCTGGCCATGTACTGTGAGAGGATAAGGAGGAA
ATTCTGGCCCGAGTGGCACCATGATGATGACAATACCATCTATGAGTCCGAGGAGAGCAG
TGAAGGCAGCAAAAGGGACACGCCCCTGCTGGATTTCAGCTTTTACTCAAGGACAGAGAC
CTTTGAAGATGAGGGAGCAGAGAACAGTTTTTCCAGGACCCCAGATACAGATTTCACTGG
ACACTCGCTCTTTGATTCCGACGTGGACATGGATGACTACACAGACCATGAACAGTGCAA
GTGATGTTTGGCCTCGCTGACCCTCTTCTGTTGGAGCTACCCCTCCCTGGGGTCGGTCCA
GCTTCCCAGGTAGAAATTCCTCCGAGCTGGGAGGAGGTCATCGTGCTTGGCACAGTTCTC
CCAGACTAACTGGACTAGAGCAGCCTTATTTCTTTTGTTTTTGTACAAATAAAACACAGA
ACCATTCCAATGGCTCCATTGAAAACAAACAGGCAAAAAAAAAAAAAAAAAAGTCAGCAT
GGTTTCTGAAGTCCATTTTTGTTTTCATTAGAAAACTAACATTGTGTGGTAGAGCAGGTG
CAAGAGCGGGTCACCCACAGACTGTGGTGACATTGATCCCCTTCAACCCGAGGGCTTGGT
TGTGAGATGGATTCTTGAACATCCTTCATGCAGCAGGGTTCAAAGTCATGGAAGAGGTCA
TCAGAAGAAATGTAGGACATAAGTGTTCTAAGGTGGCTGCTTGTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCAGGGC
GGTGACTAAGATGGTGGAGGAGCATTTCTACTGGACCTTAGCTTATTGCCAGTGGGTGGA
CAATCTCAATGAGACCCGGAAGATGCTCTCTCTTAGTGGTGGCGGTCCCTTCAGTAACCT
GCTGAGGTGGGTCGTGTGCCACATAACGAAAGGAATCGTGAAACGCGAGATGCACGGCCA
CGGCATTGGCCGCTTCTCAGAGGAAGAGATTTACATGCTGATGGAGAAGGACATGCGGTC
GTTAGCGGGGCTTCTGGGTGATAAGAAGTACATCATGGGGCCCAAGCTTTCCACTCTCGA
TGCCACTGTGTTTGGACACTTGGCACAGGCAATGTGGACCTTACCTGGGACGAGACCTGA
GCGGCTGATAAAAGGTGAGCTGATCAATCTGGCCATGTACTGTGAGAGGATAAGGAGGAA
ATTCTGGCCCGAGTGGCACCATGATGATGACAATACCATCTATGAGTCCGAGGAGAGCAG
TGAAGGCAGCAAAAGGGACACGCCCCTGCTGGATTTCAGCTTTTACTCAAGGACAGAGAC
CTTTGAAGATGAGGGAGCAGAGAACAGTTTTTCCAGGACCCCAGATACAGATTTCACTGG
ACACTCGCTCTTTGATTCCGACGTGGACATGGATGACTACACAGACCATGAACAGTGCAA
GTGATGTTTGGCCTCGCTGACCCTCTTCTGTTGGAGCTACCCCTCCCTGGGGTCGGTCCA
GCTTCCCAGGTAGAAATTCCTCCGAGCTGGGAGGAGGTCATCGTGCTTGGCACAGTTCTC
CCAGACTAACTGGACTAGAGCAGCCTTATTTCTTTTGTTTTTGTACAAATAAAACACAGA
ACCATTCCAATGGCTCCATTGAAAACAAACAGGCAAAAAAAAAAAAAAAAAAGTCAGCAT
GGTTTCTGAAGTCCATTTTTGTTTTCATTAGAAAACTAACATTGTGTGGTAGAGCAGGTG
CAAGAGCGGGTCACCCACAGACTGTGGTGACATTGATCCCCTTCAACCCGAGGGCTTGGT
TGTGAGATGGATTCTTGAACATCCTTCATGCAGCAGGGTTCAAAGTCATGGAAGAGGTCA
TCAGAAGAAATGTAGGACATAAGTGTTCTAAGGTGGCTGCTTGTATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13676362|gb|AAH06515.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13676362|gb|AAH06515.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               132-251, + strand, RNAz p=0.635578

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-251, + strand, RNAz p=0.635578

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC011583, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC011583, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               93-319, gnl|bosTau2|chr9 (33597349-33597123)
               

               
               93-319, gnl|Hg17|chr6 (99878265-99878039)
               

               
               93-319, gnl|Mm7|chr4 (21962100-21962326)
               


               
               433-1188, gnl|bosTau2|chr9 (33555801-33555055)
               

               
               433-1188, gnl|Hg17|chr6 (99836052-99835317)
               

               
               433-1188, gnl|Mm7|chr4 (21996953-21997698)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-319, gnl|bosTau2|chr9 (33597349-33597123)
               

               
               93-319, gnl|Hg17|chr6 (99878265-99878039)
               

               
               93-319, gnl|Mm7|chr4 (21962100-21962326)
               


               
               433-1188, gnl|bosTau2|chr9 (33555801-33555055)
               

               
               433-1188, gnl|Hg17|chr6 (99836052-99835317)
               

               
               433-1188, gnl|Mm7|chr4 (21996953-21997698)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	93-319, gnl\|bosTau2\|chr9 (33597349-33597123)
	93-319, gnl\|Hg17\|chr6 (99878265-99878039)
	93-319, gnl\|Mm7\|chr4 (21962100-21962326)

	433-1188, gnl\|bosTau2\|chr9 (33555801-33555055)
	433-1188, gnl\|Hg17\|chr6 (99836052-99835317)
	433-1188, gnl\|Mm7\|chr4 (21996953-21997698)