Non-Coding RNA Search

Ss1.1-Pig2-40H14.5

Sequence:


               
               AGGATCCTCAAGGACGTTTTCTCATCCCCTGGGATGGTGGCTTTGAACACTAGGGCCTCA
TTCATTCTGCCCTTGGTTCCTTCCCAAGTGACCACCATCCCCCCGGGGACAGTGGGAACA
GTCCCTCCCTCCTACTGACAGGCTGGGTCTCATCCAAAGGGTGGATACCCTTTCACCCCA
AGCAGAAATGGCATCCCCAGAGCGGCAGCTGTCGCCGTAACAATTGTGCCCGTGCCAACC
AGGCCGATGGAGGGCCAGGACGTGACGCTGACCGTACAGGGCTACCCCAAGGACCTGCTG
GTCTACGCCTGGTACCGGGGGCCTGCTGCGGAGCCCAACCGACTGCTTAGCCAGCTGCCT
TCGGGGAACTGGATCGCAGGCCCTGCGCACACAGGCCGGGAGGTGGGCTTCCCCAACTGC
TCGCTGCTGGTACAGAAGCTGAACCTCACGGACGCAGGCCGCTACACGCTCAAGACCGTC
ACGCTGCAGGGCAAGACTGAGACGCTGGAAGTGGAGCTGCAGGTGGCCCCCCTGGAGTAG
CACCGTGACCCTGGAGACATCCAGAGAGATGAGCGCTTCGAGCCCCCCTCCTCATCTCCG
CCCCCTGAGTGGAGGACCCCTCGCTTCCAGCAAGGATGCCGGGCCATGGTGCACTCTTCT
CCTGCTTCCACCCTAGAGTTAGAGCCACTGGGGCCCCACTCCTTCACTAAGCTGTCAGAG
AGCCACAGAGGCTATAAACATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATCCTCAAGGACGTTTTCTCATCCCCTGGGATGGTGGCTTTGAACACTAGGGCCTCA
TTCATTCTGCCCTTGGTTCCTTCCCAAGTGACCACCATCCCCCCGGGGACAGTGGGAACA
GTCCCTCCCTCCTACTGACAGGCTGGGTCTCATCCAAAGGGTGGATACCCTTTCACCCCA
AGCAGAAATGGCATCCCCAGAGCGGCAGCTGTCGCCGTAACAATTGTGCCCGTGCCAACC
AGGCCGATGGAGGGCCAGGACGTGACGCTGACCGTACAGGGCTACCCCAAGGACCTGCTG
GTCTACGCCTGGTACCGGGGGCCTGCTGCGGAGCCCAACCGACTGCTTAGCCAGCTGCCT
TCGGGGAACTGGATCGCAGGCCCTGCGCACACAGGCCGGGAGGTGGGCTTCCCCAACTGC
TCGCTGCTGGTACAGAAGCTGAACCTCACGGACGCAGGCCGCTACACGCTCAAGACCGTC
ACGCTGCAGGGCAAGACTGAGACGCTGGAAGTGGAGCTGCAGGTGGCCCCCCTGGAGTAG
CACCGTGACCCTGGAGACATCCAGAGAGATGAGCGCTTCGAGCCCCCCTCCTCATCTCCG
CCCCCTGAGTGGAGGACCCCTCGCTTCCAGCAAGGATGCCGGGCCATGGTGCACTCTTCT
CCTGCTTCCACCCTAGAGTTAGAGCCACTGGGGCCCCACTCCTTCACTAAGCTGTCAGAG
AGCCACAGAGGCTATAAACATCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812225|ref|XP_603694.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812225|ref|XP_603694.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               194-529, gnl|bosTau2|chr6 (49121061-49120726)
               

               
               194-529, gnl|Hg17|chr19 (49902964-49903299)
               

               
               194-529, gnl|Mm7|chr7 (17536281-17535946)
               


               
               531-744, gnl|bosTau2|chr6 (49119174-49118962)
               

               
               531-744, gnl|Hg17|chr19 (49905609-49905820)
               

               
               531-744, gnl|Mm7|chr7 (17534686-17534481)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-529, gnl|bosTau2|chr6 (49121061-49120726)
               

               
               194-529, gnl|Hg17|chr19 (49902964-49903299)
               

               
               194-529, gnl|Mm7|chr7 (17536281-17535946)
               


               
               531-744, gnl|bosTau2|chr6 (49119174-49118962)
               

               
               531-744, gnl|Hg17|chr19 (49905609-49905820)
               

               
               531-744, gnl|Mm7|chr7 (17534686-17534481)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	194-529, gnl\|bosTau2\|chr6 (49121061-49120726)
	194-529, gnl\|Hg17\|chr19 (49902964-49903299)
	194-529, gnl\|Mm7\|chr7 (17536281-17535946)

	531-744, gnl\|bosTau2\|chr6 (49119174-49118962)
	531-744, gnl\|Hg17\|chr19 (49905609-49905820)
	531-744, gnl\|Mm7\|chr7 (17534686-17534481)