Non-Coding RNA Search

Ss1.1-Pig2-40O18.5

Sequence:


               
               GGACTTTTGATAAGCAGAGGCTATAAATGGGCGTGGGGGAGTTGGTGGGAGACCCGGTCC
CAGGGCTTGGGTCTCCTGTTTTTGTGCACTTCCGCTCTGAAGGCATAAGATGAGTCCAGA
CAGCAGGCTGGTCACTGGTCAAATGGTCGTTGTAAGTGGGCACAGCTAACCCCTCTCCTG
GGAGGCCCCTGTCCCAGTGGGTACAAGTGTCCTGTGTCCCTGGTGCTAAATGCTCTCTTC
CCCTTGGGCTAGTGTTGGTGAGAGCTCTTTTCTAGCCAGACCACAAGAGTCTGAAGCAAT
AATGGAACCTCAGCAGTGCCAGTATGGATAGGGGTTCTTGTTTTACCAGCTTTTGCATTA
CCTTTTTAATTTTTAAAACAAATTAACAAGCACCTGGATAATGGAGTGAGGGGACTGGGG
CATCATACCCAATTCCCGGGGGTAGTGGTGGGGAGGGGGCTTGGGGTCATCACCTCCCAC
TGGAGATCTGCCCAGGGGTCCCTCTGTCCAGCTGGACTTCTCAGCCATTTGGCCAAGACC
TCAAGTTTGGAACCTGGGCCTGCCCCCTCCCAACTCCCCTTGCACTCCCTGGTCTTGGGC
CAGCTGAGGGTGAATGGCTAGAAAGATGAGGTGGGCCTTAAGCCCCTTGGCCACAGTTCT
GGGAACCGGGGCTGGGGGGCAGGGCCTGAGCCGCTGACCCTGATGCATGCCACCATAGCC
GCCACAGCATGGGCTCAGCAGTGGCAGAACGGCTGTGCCCAGGCATGTGGACCCTTAATG
TCTGGTCCTATGTGGCCACCCCACAGCCCCAGAGTGCGTGGGGGACAGCAGGAGGGCGAG
GAGAAGAGCGAAGGGGAATAAAGACAGTACAACTGTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTTTTGATAAGCAGAGGCTATAAATGGGCGTGGGGGAGTTGGTGGGAGACCCGGTCC
CAGGGCTTGGGTCTCCTGTTTTTGTGCACTTCCGCTCTGAAGGCATAAGATGAGTCCAGA
CAGCAGGCTGGTCACTGGTCAAATGGTCGTTGTAAGTGGGCACAGCTAACCCCTCTCCTG
GGAGGCCCCTGTCCCAGTGGGTACAAGTGTCCTGTGTCCCTGGTGCTAAATGCTCTCTTC
CCCTTGGGCTAGTGTTGGTGAGAGCTCTTTTCTAGCCAGACCACAAGAGTCTGAAGCAAT
AATGGAACCTCAGCAGTGCCAGTATGGATAGGGGTTCTTGTTTTACCAGCTTTTGCATTA
CCTTTTTAATTTTTAAAACAAATTAACAAGCACCTGGATAATGGAGTGAGGGGACTGGGG
CATCATACCCAATTCCCGGGGGTAGTGGTGGGGAGGGGGCTTGGGGTCATCACCTCCCAC
TGGAGATCTGCCCAGGGGTCCCTCTGTCCAGCTGGACTTCTCAGCCATTTGGCCAAGACC
TCAAGTTTGGAACCTGGGCCTGCCCCCTCCCAACTCCCCTTGCACTCCCTGGTCTTGGGC
CAGCTGAGGGTGAATGGCTAGAAAGATGAGGTGGGCCTTAAGCCCCTTGGCCACAGTTCT
GGGAACCGGGGCTGGGGGGCAGGGCCTGAGCCGCTGACCCTGATGCATGCCACCATAGCC
GCCACAGCATGGGCTCAGCAGTGGCAGAACGGCTGTGCCCAGGCATGTGGACCCTTAATG
TCTGGTCCTATGTGGCCACCCCACAGCCCCAGAGTGCGTGGGGGACAGCAGGAGGGCGAG
GAGAAGAGCGAAGGGGAATAAAGACAGTACAACTGTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               6-154, - strand, RNAz p=0.997895
               

               
               422-685, - strand, RNAz p=0.999749

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-154, - strand, RNAz p=0.997895
               

               
               422-685, - strand, RNAz p=0.999749

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               18-104, + strand, RNAmicro p=0.9923

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               18-104, + strand, RNAmicro p=0.9923

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-685, gnl|bosTau2|chr22 (14291115-14290428)
               

               
               6-685, gnl|Hg17|chr3 (42683211-42683873)
               


               
               739-877, gnl|bosTau2|chr22 (14290335-14290198)
               

               
               739-877, gnl|Hg17|chr3 (42683936-42684078)
               

               
               739-877, gnl|Mm7|chr9 (121472172-121472307)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-685, gnl|bosTau2|chr22 (14291115-14290428)
               

               
               6-685, gnl|Hg17|chr3 (42683211-42683873)
               


               
               739-877, gnl|bosTau2|chr22 (14290335-14290198)
               

               
               739-877, gnl|Hg17|chr3 (42683936-42684078)
               

               
               739-877, gnl|Mm7|chr9 (121472172-121472307)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)

	6-154, - strand, RNAz p=0.997895
	422-685, - strand, RNAz p=0.999749

	6-685, gnl\|bosTau2\|chr22 (14291115-14290428)
	6-685, gnl\|Hg17\|chr3 (42683211-42683873)

	739-877, gnl\|bosTau2\|chr22 (14290335-14290198)
	739-877, gnl\|Hg17\|chr3 (42683936-42684078)
	739-877, gnl\|Mm7\|chr9 (121472172-121472307)

	fbs (0.175346)
	nje (0.16592)
	hyp (0.142837)
	hlv (0.139256)
	ecc (0.115035)