Non-Coding RNA Search

Ss1.1-Pig2-41B14.5

Sequence:


               
               CATTTATAAGCATTGAATACTCCATCCCCTTCCCTCCCAATGAATGGAATGAGAAAAGCC
TTCTTCCTTTGCTTCAGGCAGCTGTCACCTTCTCTTTGTTGGTGGTCCCAAGTGGGTCAC
TTAAGAAAAAAGTGTAACAGATTCTCACTCCATGAACCTGACATTTTGATTCTGTTGTGA
CAAATTTTTAAATCTCCAACTTGCTGTTTCCAAAAAGAAGGTGCAATATCATACATCATC
AGTTAGCAATATTAGCATTTCAATCAATGATTTGAATGTTGATACTCTCTTACTTTTTCC
TTTACATTTCCAGTAAGCTTCTTACCGGAAGTACTTGTGATTTTTTTTTTTTTAAATGTT
TAGATTTGTAGTCTATTCTGAAGATATTTGAGTAATATATTTCTAAGAATACCACTGGTC
CCATGAAGTCTCACCTCCTTTACTTCCACCAGAACAAAATCTGTTAATTCTGATATGTGT
TCCTTGTTCAACCTCCCATAGGCAACTAAATTGTTTTAAGTAAACTATATTTCTGTTCAT
ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCCTTTTAAATTTC
CCCTGGGGGGGCCAAATTTTCCCCCCCCCCTTTTTTTTTGAAAAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTATAAGCATTGAATACTCCATCCCCTTCCCTCCCAATGAATGGAATGAGAAAAGCC
TTCTTCCTTTGCTTCAGGCAGCTGTCACCTTCTCTTTGTTGGTGGTCCCAAGTGGGTCAC
TTAAGAAAAAAGTGTAACAGATTCTCACTCCATGAACCTGACATTTTGATTCTGTTGTGA
CAAATTTTTAAATCTCCAACTTGCTGTTTCCAAAAAGAAGGTGCAATATCATACATCATC
AGTTAGCAATATTAGCATTTCAATCAATGATTTGAATGTTGATACTCTCTTACTTTTTCC
TTTACATTTCCAGTAAGCTTCTTACCGGAAGTACTTGTGATTTTTTTTTTTTTAAATGTT
TAGATTTGTAGTCTATTCTGAAGATATTTGAGTAATATATTTCTAAGAATACCACTGGTC
CCATGAAGTCTCACCTCCTTTACTTCCACCAGAACAAAATCTGTTAATTCTGATATGTGT
TCCTTGTTCAACCTCCCATAGGCAACTAAATTGTTTTAAGTAAACTATATTTCTGTTCAT
ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCCTTTTAAATTTC
CCCTGGGGGGGCCAAATTTTCCCCCCCCCCTTTTTTTTTGAAAAAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               45-162, - strand, RNAz p=0.926785

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-162, - strand, RNAz p=0.926785

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-538, gnl|bosTau2|chr14 (5054368-5054917)
               

               
               6-538, gnl|Hg17|chr9 (36329098-36328558)
               

               
               6-538, gnl|Mm7|chr4 (44142761-44142198)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-538, gnl|bosTau2|chr14 (5054368-5054917)
               

               
               6-538, gnl|Hg17|chr9 (36329098-36328558)
               

               
               6-538, gnl|Mm7|chr4 (44142761-44142198)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	6-538, gnl\|bosTau2\|chr14 (5054368-5054917)
	6-538, gnl\|Hg17\|chr9 (36329098-36328558)
	6-538, gnl\|Mm7\|chr4 (44142761-44142198)