Non-Coding RNA Search

Ss1.1-Pig2-42A09.5

Sequence:


               
               GGGAGGGCACGCGCTTCTCCGAGGTGCAGGCCCTGCCCTCCCGGGGCTCACTGGCCCTGC
AGCCCTTCCTCGTGGGTGGCCGCCGCTACCTGGCGCTGGGTAGTGACTTCTCATTCACGC
AGATCTATCAGTGGGATGAGGGGCGGCAGAAATTTGTGCGGTTCCAGGAGCTGGCAGTGC
AGGCCCCCCGGGCCTTCTGCTACATGCCTGCCGGGGACGCCCAGCTCCTCCTGGCCCCCA
GCTTCAAGGGACAGACGCTTGTGTACCGACACGTGGTGGTGGATCTCAGTGCCTAGAGCA
GGGGCCAAGGCCTCTGGGTTCCTCAGGCGGCCACTGGAGACTGGCAGGAGCCTCCAGGGG
AGCAGCATGTGTGCCTGTGTGAAGACACACTCAGCCAGCCCGCACATGCGCCCTTATGTG
CATACACCCCTGGGAAGCACGGGCTGCGCCGTGGATGCTAGCCCAGGGAAGCCACTTGTA
ATCAGCATGACGACTTGTATACACACCAGGGAACCCAGGGCCCGGTGCCCGCCCTCCCGT
GTGTGGATGCCTATTCACCCACACCTTGTCTGCAGCCTCCTTCCCTCTGCCACCTTCCAC
GGGCTCTGGCCCAGGGAGGGGCGCTGGGAGGGACGGGAGGCTAAACCGCTCCCTCCTGTT
CTTCGGCTGTGTCCTTCCGACCCCTAGTCTTTCCTGTTGGTGCTCCAGGTGTCTGTTTAC
CTGCTTGTGCTCCGCCTTGCAGCCCACAGCCACGTCCCTCATACTGCCGGGTGCACTCGC
CCACACTCCAAGCCTTCTGCACACACACGTGGACAACGACAGACTCCCTTGGTTGCATTA
ACACACACCTGTCTACACTCCCATCTCTGTGTGCACATGTGCGGATTCAGCGCTGCCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGGCACGCGCTTCTCCGAGGTGCAGGCCCTGCCCTCCCGGGGCTCACTGGCCCTGC
AGCCCTTCCTCGTGGGTGGCCGCCGCTACCTGGCGCTGGGTAGTGACTTCTCATTCACGC
AGATCTATCAGTGGGATGAGGGGCGGCAGAAATTTGTGCGGTTCCAGGAGCTGGCAGTGC
AGGCCCCCCGGGCCTTCTGCTACATGCCTGCCGGGGACGCCCAGCTCCTCCTGGCCCCCA
GCTTCAAGGGACAGACGCTTGTGTACCGACACGTGGTGGTGGATCTCAGTGCCTAGAGCA
GGGGCCAAGGCCTCTGGGTTCCTCAGGCGGCCACTGGAGACTGGCAGGAGCCTCCAGGGG
AGCAGCATGTGTGCCTGTGTGAAGACACACTCAGCCAGCCCGCACATGCGCCCTTATGTG
CATACACCCCTGGGAAGCACGGGCTGCGCCGTGGATGCTAGCCCAGGGAAGCCACTTGTA
ATCAGCATGACGACTTGTATACACACCAGGGAACCCAGGGCCCGGTGCCCGCCCTCCCGT
GTGTGGATGCCTATTCACCCACACCTTGTCTGCAGCCTCCTTCCCTCTGCCACCTTCCAC
GGGCTCTGGCCCAGGGAGGGGCGCTGGGAGGGACGGGAGGCTAAACCGCTCCCTCCTGTT
CTTCGGCTGTGTCCTTCCGACCCCTAGTCTTTCCTGTTGGTGCTCCAGGTGTCTGTTTAC
CTGCTTGTGCTCCGCCTTGCAGCCCACAGCCACGTCCCTCATACTGCCGGGTGCACTCGC
CCACACTCCAAGCCTTCTGCACACACACGTGGACAACGACAGACTCCCTTGGTTGCATTA
ACACACACCTGTCTACACTCCCATCTCTGTGTGCACATGTGCGGATTCAGCGCTGCCTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865946|ref|XP_594818.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865946|ref|XP_594818.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-279, - strand, RNAz p=0.755791
               

               
               546-663, + strand, RNAz p=0.727156

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-279, - strand, RNAz p=0.755791
               

               
               546-663, + strand, RNAz p=0.727156

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_139278, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_139278, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr8 (31433143-31434036)
               

               
               1-900, gnl|Hg17|chr8 (22061913-22061008)
               

               
               1-900, gnl|Mm7|chr14 (65181223-65182118)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr8 (31433143-31434036)
               

               
               1-900, gnl|Hg17|chr8 (22061913-22061008)
               

               
               1-900, gnl|Mm7|chr14 (65181223-65182118)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	120-279, - strand, RNAz p=0.755791
	546-663, + strand, RNAz p=0.727156

	1-900, gnl\|bosTau2\|chr8 (31433143-31434036)
	1-900, gnl\|Hg17\|chr8 (22061913-22061008)
	1-900, gnl\|Mm7\|chr14 (65181223-65182118)