Ss1.1-Pig2-42G03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAACCTGGATTGTGGCAGTGCCCACGGGGCAGAGCTGGGTGACCATTCCACGGGAACAG CTCACCACAGCGGACAAACTCCTTGTCTGGGCAGCCAAGGCAGGCCAGCCTCTCTGGACC CCAGTCTTCGTGAACCTCGAAACCCAAATGAAGCCAGATGCCCCCCGATTGTACCCTGAT GTGGACTTCTCAGAGGATGACCCCCTAGAGGCCATTGTCCAGTGGGCCCCTCCTGTGTGG CCACCGCATAAGGTCCTGGTCTGCCAGTTCCGCTACCGAAGATGCCAGGAGACAGACTGG ACCCTGCTGGAACCAGAAGTGAAGTCCATACCCCTGACCCCTCTTGAGATCCAGGACCTA GAGCTAGCCACTGTCTATGAGATGTCTGGCCGCTGCCAAGTGGAGAAAGAAGAGAATTTG TGGGGCGAGTGGAGCCCCATTCTGTCCTTCCAGACACCACCCTCTGGTCCGAAAGATGTG TGGATATCAGGGAACATCTGTGGGGCACCAGGCGGACAGGAACCCCTACTTCTGTGGAAG GCCTCAGGGCACTGTGTGCAGGTCAGCTATAGAGTCTGGTTCCAGGTTAAAGATCAGGAA CTGACCCAGGAGGAGACTCCCTGCTGCAACTTCTCCATCCCAACGCAGGCAGAGTGGGCT TGGGTGTCTGCCGTCAATGCCACAAGCTGGGAGCCTCCTACCAACCTCTCTCTGGCTTGC TTGGGTCCAGACTTTGCCCCCCATGGCGTGGAGGTCAGCATCATTGGGAGCAAAGAGCTG CTGGTGACTTGGCATCAGGGGTCTGGAGGGCCTCAAGAGCATGTGGTGGACTGGGCTCGA GATGGAGACCCCTTGGAGGACCTCAGCTGGGTCCGGCTTCCTCCTGGGAACCTTAGCGCT GTGTTGCCAGGGAATTTCACCAGAGGGGTCCCCTACCGAATCACGGTGACAGCAGTCTCT CCTTGGGGCTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAACCTGGATTGTGGCAGTGCCCACGGGGCAGAGCTGGGTGACCATTCCACGGGAACAG CTCACCACAGCGGACAAACTCCTTGTCTGGGCAGCCAAGGCAGGCCAGCCTCTCTGGACC CCAGTCTTCGTGAACCTCGAAACCCAAATGAAGCCAGATGCCCCCCGATTGTACCCTGAT GTGGACTTCTCAGAGGATGACCCCCTAGAGGCCATTGTCCAGTGGGCCCCTCCTGTGTGG CCACCGCATAAGGTCCTGGTCTGCCAGTTCCGCTACCGAAGATGCCAGGAGACAGACTGG ACCCTGCTGGAACCAGAAGTGAAGTCCATACCCCTGACCCCTCTTGAGATCCAGGACCTA GAGCTAGCCACTGTCTATGAGATGTCTGGCCGCTGCCAAGTGGAGAAAGAAGAGAATTTG TGGGGCGAGTGGAGCCCCATTCTGTCCTTCCAGACACCACCCTCTGGTCCGAAAGATGTG TGGATATCAGGGAACATCTGTGGGGCACCAGGCGGACAGGAACCCCTACTTCTGTGGAAG GCCTCAGGGCACTGTGTGCAGGTCAGCTATAGAGTCTGGTTCCAGGTTAAAGATCAGGAA CTGACCCAGGAGGAGACTCCCTGCTGCAACTTCTCCATCCCAACGCAGGCAGAGTGGGCT TGGGTGTCTGCCGTCAATGCCACAAGCTGGGAGCCTCCTACCAACCTCTCTCTGGCTTGC TTGGGTCCAGACTTTGCCCCCCATGGCGTGGAGGTCAGCATCATTGGGAGCAAAGAGCTG CTGGTGACTTGGCATCAGGGGTCTGGAGGGCCTCAAGAGCATGTGGTGGACTGGGCTCGA GATGGAGACCCCTTGGAGGACCTCAGCTGGGTCCGGCTTCCTCCTGGGAACCTTAGCGCT GTGTTGCCAGGGAATTTCACCAGAGGGGTCCCCTACCGAATCACGGTGACAGCAGTCTCT CCTTGGGGCTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 34-148, - strand, RNAz p=0.521497 | |
| 320-439, - strand, RNAz p=0.532422 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 34-148, - strand, RNAz p=0.521497 | |
| 320-439, - strand, RNAz p=0.532422 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-148, gnl|bosTau2|chr7 (7774660-7774513) | |
| 1-148, gnl|canFam2|chr20 (51470390-51470138) | |
| 1-148, gnl|dasNov1|scaffold_134159 (3997-4302) | |
| 1-148, gnl|echTel1|scaffold_203917 (2362-2116) | |
| 1-148, gnl|hg17|chr19 (14011208-14011483) | |
| 1-148, gnl|Hg17|chr19 (14011330-14011477) | |
| 1-148, gnl|mm7|chr8 (82619332-82619075) | |
| 1-148, gnl|Mm7|chr8 (82619226-82619079) | |
| 1-148, gnl|rheMac2|chr19 (13731056-13731331) | |
| 1-148, gnl|rn3|chr19 (25801414-25801690) | |
| 149-286, gnl|bosTau2|chr7 (7774427-7774290) | |
| 149-286, gnl|canFam2|chr20 (51470137-51469749) | |
| 149-286, gnl|dasNov1|scaffold_134159 (4303-4682) | |
| 149-286, gnl|echTel1|scaffold_203917 (2115-1769) | |
| 149-286, gnl|hg17|chr19 (14011484-14011858) | |
| 149-286, gnl|Hg17|chr19 (14011565-14011702) | |
| 149-286, gnl|mm7|chr8 (82619069-82618697) | |
| 149-286, gnl|Mm7|chr8 (82618977-82618840) | |
| 149-286, gnl|oryCun1|scaffold_192349 (5926-5546) | |
| 149-286, gnl|rheMac2|chr19 (13731332-13731707) | |
| 149-286, gnl|rn3|chr19 (25801696-25802057) | |
| 302-468, gnl|bosTau2|chr7 (7772082-7771916) | |
| 302-468, gnl|canFam2|chr20 (51469184-51468802) | |
| 302-468, gnl|hg17|chr19 (14014214-14014612) | |
| 302-468, gnl|Hg17|chr19 (14014260-14014426) | |
| 302-468, gnl|mm7|chr8 (82617819-82617433) | |
| 302-468, gnl|Mm7|chr8 (82617785-82617622) | |
| 302-468, gnl|oryCun1|scaffold_192349 (5214-4804) | |
| 302-468, gnl|panTro1|chr20_random (3071736-3071336) | |
| 302-468, gnl|rheMac2|chr19 (13734474-13734872) | |
| 302-468, gnl|rn3|chr19 (25803078-25803429) | |
| 539-726, gnl|bosTau2|chr7 (7767478-7767291) | |
| 539-726, gnl|canFam2|chr20 (51466418-51466178) | |
| 539-726, gnl|hg17|chr19 (14017936-14018177) | |
| 539-726, gnl|Hg17|chr19 (14017964-14018151) | |
| 539-726, gnl|loxAfr1|scaffold_120665 (6115-5874) | |
| 539-726, gnl|mm7|chr8 (82614723-82614483) | |
| 539-726, gnl|Mm7|chr8 (82614694-82614507) | |
| 539-726, gnl|monDom2|scaffold_159 (1280594-1280864) | |
| 539-726, gnl|oryCun1|scaffold_192349 (3685-3450) | |
| 539-726, gnl|panTro1|chr20_random (3068015-3067775) | |
| 539-726, gnl|rheMac2|chr19 (13735646-13735887) | |
| 539-726, gnl|rn3|chr19 (25805609-25805849) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-148, gnl|bosTau2|chr7 (7774660-7774513) | |
| 1-148, gnl|canFam2|chr20 (51470390-51470138) | |
| 1-148, gnl|dasNov1|scaffold_134159 (3997-4302) | |
| 1-148, gnl|echTel1|scaffold_203917 (2362-2116) | |
| 1-148, gnl|hg17|chr19 (14011208-14011483) | |
| 1-148, gnl|Hg17|chr19 (14011330-14011477) | |
| 1-148, gnl|mm7|chr8 (82619332-82619075) | |
| 1-148, gnl|Mm7|chr8 (82619226-82619079) | |
| 1-148, gnl|rheMac2|chr19 (13731056-13731331) | |
| 1-148, gnl|rn3|chr19 (25801414-25801690) | |
| 149-286, gnl|bosTau2|chr7 (7774427-7774290) | |
| 149-286, gnl|canFam2|chr20 (51470137-51469749) | |
| 149-286, gnl|dasNov1|scaffold_134159 (4303-4682) | |
| 149-286, gnl|echTel1|scaffold_203917 (2115-1769) | |
| 149-286, gnl|hg17|chr19 (14011484-14011858) | |
| 149-286, gnl|Hg17|chr19 (14011565-14011702) | |
| 149-286, gnl|mm7|chr8 (82619069-82618697) | |
| 149-286, gnl|Mm7|chr8 (82618977-82618840) | |
| 149-286, gnl|oryCun1|scaffold_192349 (5926-5546) | |
| 149-286, gnl|rheMac2|chr19 (13731332-13731707) | |
| 149-286, gnl|rn3|chr19 (25801696-25802057) | |
| 302-468, gnl|bosTau2|chr7 (7772082-7771916) | |
| 302-468, gnl|canFam2|chr20 (51469184-51468802) | |
| 302-468, gnl|hg17|chr19 (14014214-14014612) | |
| 302-468, gnl|Hg17|chr19 (14014260-14014426) | |
| 302-468, gnl|mm7|chr8 (82617819-82617433) | |
| 302-468, gnl|Mm7|chr8 (82617785-82617622) | |
| 302-468, gnl|oryCun1|scaffold_192349 (5214-4804) | |
| 302-468, gnl|panTro1|chr20_random (3071736-3071336) | |
| 302-468, gnl|rheMac2|chr19 (13734474-13734872) | |
| 302-468, gnl|rn3|chr19 (25803078-25803429) | |
| 539-726, gnl|bosTau2|chr7 (7767478-7767291) | |
| 539-726, gnl|canFam2|chr20 (51466418-51466178) | |
| 539-726, gnl|hg17|chr19 (14017936-14018177) | |
| 539-726, gnl|Hg17|chr19 (14017964-14018151) | |
| 539-726, gnl|loxAfr1|scaffold_120665 (6115-5874) | |
| 539-726, gnl|mm7|chr8 (82614723-82614483) | |
| 539-726, gnl|Mm7|chr8 (82614694-82614507) | |
| 539-726, gnl|monDom2|scaffold_159 (1280594-1280864) | |
| 539-726, gnl|oryCun1|scaffold_192349 (3685-3450) | |
| 539-726, gnl|panTro1|chr20_random (3068015-3067775) | |
| 539-726, gnl|rheMac2|chr19 (13735646-13735887) | |
| 539-726, gnl|rn3|chr19 (25805609-25805849) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |