Ss1.1-Pig2-42J13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGGAGAAGCGGGAGCTGTACGACGTCTACGTGGACAACCAGAACGTGAAGACGCACCA CGACCACCTGCAGCCGCTGCTGAAGATCAACAGCGCCGACCGCGAGAAGTACCGGCGGCT CAACGAGCAGAGGCAGATGCTGCTCTATTCCCAGGAGGTGGAAGAGGATTATAACCCCTG CGAAGAGGACCTCTTCGTGCTGTTTTTCCTAGAGCAAAACAACCGGATATTTCAGACTTT GTTGGAGGTGTCCGCCAGTCAAGACAAAACCCTGACGGCGGAGCACGCCCGGGTCATGGG TCTGGACCCCCAAGGAGACCGGAGCTTTCTCCTGGACCTGCTGGAGGCCTATGGCATCGA CGTCATGTTGGTCATTGACAACCCCTGTTGCCCATAGGAAGGATGAGCGGCTGTCCTGTG GGGCGGCCATGTGTCCTGTGTCACCCAGGCCCCAGACGGCCTTTTATGAAGTTGACGCAA AGGAATATTGTTTATCCTTCCAACAGAGGTCACGTGTGCATCTCCTTTCTCCCCTTCCTC CCTAGAGGGAATATGAGCGCCTCGATTTGTAGGTCGTTGGAATCGACCCCTTGCAGAGCC GCCACCGTTCTTGGTCTTAGGAGTGGTCCAAGCAGCTTCTCTCCTCCTCTCCTGGGGTCG GGGTGGGGGAAGTGGCGCGCCTGGAGGAGGTGTGGCCAAGGCTGAGTATCACCAGTAGGC GGCCGGGCTCCGGAAGCCCTCGGGTGGACTGTTGAGAAGGTCCATCTGGTTCCTGTCCCT TGATGTTTTCAGCATGAGACACCTGTCTGTCCTTTGCAGCCCTGGATGTCCATCCGCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGGAGAAGCGGGAGCTGTACGACGTCTACGTGGACAACCAGAACGTGAAGACGCACCA CGACCACCTGCAGCCGCTGCTGAAGATCAACAGCGCCGACCGCGAGAAGTACCGGCGGCT CAACGAGCAGAGGCAGATGCTGCTCTATTCCCAGGAGGTGGAAGAGGATTATAACCCCTG CGAAGAGGACCTCTTCGTGCTGTTTTTCCTAGAGCAAAACAACCGGATATTTCAGACTTT GTTGGAGGTGTCCGCCAGTCAAGACAAAACCCTGACGGCGGAGCACGCCCGGGTCATGGG TCTGGACCCCCAAGGAGACCGGAGCTTTCTCCTGGACCTGCTGGAGGCCTATGGCATCGA CGTCATGTTGGTCATTGACAACCCCTGTTGCCCATAGGAAGGATGAGCGGCTGTCCTGTG GGGCGGCCATGTGTCCTGTGTCACCCAGGCCCCAGACGGCCTTTTATGAAGTTGACGCAA AGGAATATTGTTTATCCTTCCAACAGAGGTCACGTGTGCATCTCCTTTCTCCCCTTCCTC CCTAGAGGGAATATGAGCGCCTCGATTTGTAGGTCGTTGGAATCGACCCCTTGCAGAGCC GCCACCGTTCTTGGTCTTAGGAGTGGTCCAAGCAGCTTCTCTCCTCCTCTCCTGGGGTCG GGGTGGGGGAAGTGGCGCGCCTGGAGGAGGTGTGGCCAAGGCTGAGTATCACCAGTAGGC GGCCGGGCTCCGGAAGCCCTCGGGTGGACTGTTGAGAAGGTCCATCTGGTTCCTGTCCCT TGATGTTTTCAGCATGAGACACCTGTCTGTCCTTTGCAGCCCTGGATGTCCATCCGCCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 241-360, + strand, RNAz p=0.640509 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 241-360, + strand, RNAz p=0.640509 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-142, gnl|bosTau2|chr13 (54271693-54271833) | |
| 1-142, gnl|canFam2|chr16 (10515137-10514986) | |
| 1-142, gnl|danRer3|chr18 (24752977-24753128) | |
| 1-142, gnl|dasNov1|scaffold_2932 (163331-163482) | |
| 1-142, gnl|echTel1|scaffold_237936 (1928-1778) | |
| 1-142, gnl|fr1|chrUn (175906098-175905947) | |
| 1-142, gnl|galGal2|chr1 (54002280-54002431) | |
| 1-142, gnl|hg17|chr7 (140817887-140818038) | |
| 1-142, gnl|Hg17|chr7 (140818019-140817875) | |
| 1-142, gnl|loxAfr1|scaffold_3186 (576-727) | |
| 1-142, gnl|mm7|chr6 (40339083-40339234) | |
| 1-142, gnl|Mm7|chr6 (40339215-40339077) | |
| 1-142, gnl|monDom2|scaffold_22 (310750-310599) | |
| 1-142, gnl|oryCun1|scaffold_58288 (878-727) | |
| 1-142, gnl|panTro1|chr6 (143573938-143574089) | |
| 1-142, gnl|rheMac2|chr3 (179140184-179140335) | |
| 1-142, gnl|rn3|chr4 (68240686-68240837) | |
| 1-142, gnl|tetNig1|chr13 (1673485-1673334) | |
| 202-423, gnl|bosTau2|chr13 (54274873-54275094) | |
| 202-423, gnl|Hg17|chr7 (140815835-140815569) | |
| 202-423, gnl|Mm7|chr6 (40336959-40336723) | |
| 455-654, gnl|bosTau2|chr13 (54275094-54275293) | |
| 455-654, gnl|canFam2|chr16 (10518290-10517987) | |
| 455-654, gnl|echTel1|scaffold_237936 (2432-2184) | |
| 455-654, gnl|galGal2|chr1 (54000213-54000484) | |
| 455-654, gnl|hg17|chr7 (140815363-140815632) | |
| 455-654, gnl|Hg17|chr7 (140815569-140815366) | |
| 455-654, gnl|mm7|chr6 (40336484-40336757) | |
| 455-654, gnl|Mm7|chr6 (40336723-40336488) | |
| 455-654, gnl|monDom2|scaffold_22 (313450-313123) | |
| 455-654, gnl|oryCun1|scaffold_177439 (13007-13202) | |
| 455-654, gnl|panTro1|chr6 (143571415-143571684) | |
| 455-654, gnl|rheMac2|chr3 (179137741-179138010) | |
| 455-654, gnl|rn3|chr4 (68238165-68238428) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-142, gnl|bosTau2|chr13 (54271693-54271833) | |
| 1-142, gnl|canFam2|chr16 (10515137-10514986) | |
| 1-142, gnl|danRer3|chr18 (24752977-24753128) | |
| 1-142, gnl|dasNov1|scaffold_2932 (163331-163482) | |
| 1-142, gnl|echTel1|scaffold_237936 (1928-1778) | |
| 1-142, gnl|fr1|chrUn (175906098-175905947) | |
| 1-142, gnl|galGal2|chr1 (54002280-54002431) | |
| 1-142, gnl|hg17|chr7 (140817887-140818038) | |
| 1-142, gnl|Hg17|chr7 (140818019-140817875) | |
| 1-142, gnl|loxAfr1|scaffold_3186 (576-727) | |
| 1-142, gnl|mm7|chr6 (40339083-40339234) | |
| 1-142, gnl|Mm7|chr6 (40339215-40339077) | |
| 1-142, gnl|monDom2|scaffold_22 (310750-310599) | |
| 1-142, gnl|oryCun1|scaffold_58288 (878-727) | |
| 1-142, gnl|panTro1|chr6 (143573938-143574089) | |
| 1-142, gnl|rheMac2|chr3 (179140184-179140335) | |
| 1-142, gnl|rn3|chr4 (68240686-68240837) | |
| 1-142, gnl|tetNig1|chr13 (1673485-1673334) | |
| 202-423, gnl|bosTau2|chr13 (54274873-54275094) | |
| 202-423, gnl|Hg17|chr7 (140815835-140815569) | |
| 202-423, gnl|Mm7|chr6 (40336959-40336723) | |
| 455-654, gnl|bosTau2|chr13 (54275094-54275293) | |
| 455-654, gnl|canFam2|chr16 (10518290-10517987) | |
| 455-654, gnl|echTel1|scaffold_237936 (2432-2184) | |
| 455-654, gnl|galGal2|chr1 (54000213-54000484) | |
| 455-654, gnl|hg17|chr7 (140815363-140815632) | |
| 455-654, gnl|Hg17|chr7 (140815569-140815366) | |
| 455-654, gnl|mm7|chr6 (40336484-40336757) | |
| 455-654, gnl|Mm7|chr6 (40336723-40336488) | |
| 455-654, gnl|monDom2|scaffold_22 (313450-313123) | |
| 455-654, gnl|oryCun1|scaffold_177439 (13007-13202) | |
| 455-654, gnl|panTro1|chr6 (143571415-143571684) | |
| 455-654, gnl|rheMac2|chr3 (179137741-179138010) | |
| 455-654, gnl|rn3|chr4 (68238165-68238428) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) |