Non-Coding RNA Search

Ss1.1-Pig2-42K14.5

Sequence:


               
               TCGCGTGGAGGCGGACAAGTACGAGTACAACGTGGTCCCCTTCCGCGAGGGTGTTCCGGC
CTCCTGGACTGGAGATCTCTTGGCCTGGTGGCCCAATCCGCAGGAGTTCCGGGCCTGCTT
TCTCAAGGTGAAGATCCAGGGCCCCCAGGAGTACATGGTCCGCTCCCACAATGCGGGCGG
CAGCCACCCGCGGACTCAGGGCCAGCTCTATGGGCTGCGGGATGCCCGCAGTGTCCGAGA
CCCCGAGCGCCCTAGCATGTCTGCTGCCTGCGTGGAGTTCAAGTGCGGAGGGATGCTGTT
CGACCAGCGTCAGGTGGACAGGACGCTGGTGACCATAATGCCCCAGGGCAGCTGCCGGCG
TGTGGCGGTCAACGGGCTCCTGCAGGATTACTTGACCCGGCACCCCCCACCTGCACCAGC
TGATGACCTGGCTGCCTTCTCCATGCTGGCCCCGCTGGACCCTCTGGGTCACAACTATGG
TGTCTATACGGTCACTGACCAGAGCCCAAGGCTGGCCAAGGAAATCGCCATTGGCCGCTG
CTTTGATGGCTCCTCTGACGGCTTCTCCAGGGAGATGAAGGCCGATGCTGGCACAGCCGT
CACCTTTCAGTGCCGGGAGCCAGCAGCGGGCCGGCCTAGCCTCTTCCAGAGGCTACTGGA
GTCCCCATCGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGTGGAGGCGGACAAGTACGAGTACAACGTGGTCCCCTTCCGCGAGGGTGTTCCGGC
CTCCTGGACTGGAGATCTCTTGGCCTGGTGGCCCAATCCGCAGGAGTTCCGGGCCTGCTT
TCTCAAGGTGAAGATCCAGGGCCCCCAGGAGTACATGGTCCGCTCCCACAATGCGGGCGG
CAGCCACCCGCGGACTCAGGGCCAGCTCTATGGGCTGCGGGATGCCCGCAGTGTCCGAGA
CCCCGAGCGCCCTAGCATGTCTGCTGCCTGCGTGGAGTTCAAGTGCGGAGGGATGCTGTT
CGACCAGCGTCAGGTGGACAGGACGCTGGTGACCATAATGCCCCAGGGCAGCTGCCGGCG
TGTGGCGGTCAACGGGCTCCTGCAGGATTACTTGACCCGGCACCCCCCACCTGCACCAGC
TGATGACCTGGCTGCCTTCTCCATGCTGGCCCCGCTGGACCCTCTGGGTCACAACTATGG
TGTCTATACGGTCACTGACCAGAGCCCAAGGCTGGCCAAGGAAATCGCCATTGGCCGCTG
CTTTGATGGCTCCTCTGACGGCTTCTCCAGGGAGATGAAGGCCGATGCTGGCACAGCCGT
CACCTTTCAGTGCCGGGAGCCAGCAGCGGGCCGGCCTAGCCTCTTCCAGAGGCTACTGGA
GTCCCCATCGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               552-670, - strand, RNAz p=0.951413

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               552-670, - strand, RNAz p=0.951413

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-670, gnl|bosTau2|chr7 (3927352-3926683)
               

               
               1-670, gnl|Hg17|chr19 (19517054-19517723)
               

               
               1-670, gnl|Mm7|chr8 (68336300-68335634)
               


               
               251-666, gnl|bosTau2|chr10 (8585195-8584780)
               

               
               251-666, gnl|Hg17|chr15 (63276682-63276267)
               

               
               251-666, gnl|Mm7|chr9 (65309260-65309675)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-670, gnl|bosTau2|chr7 (3927352-3926683)
               

               
               1-670, gnl|Hg17|chr19 (19517054-19517723)
               

               
               1-670, gnl|Mm7|chr8 (68336300-68335634)
               


               
               251-666, gnl|bosTau2|chr10 (8585195-8584780)
               

               
               251-666, gnl|Hg17|chr15 (63276682-63276267)
               

               
               251-666, gnl|Mm7|chr9 (65309260-65309675)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-670, gnl\|bosTau2\|chr7 (3927352-3926683)
	1-670, gnl\|Hg17\|chr19 (19517054-19517723)
	1-670, gnl\|Mm7\|chr8 (68336300-68335634)

	251-666, gnl\|bosTau2\|chr10 (8585195-8584780)
	251-666, gnl\|Hg17\|chr15 (63276682-63276267)
	251-666, gnl\|Mm7\|chr9 (65309260-65309675)