Non-Coding RNA Search

Ss1.1-Pig2-42L10.5

Sequence:


               
               GNGAAGACAAAGTGAAATTCCAGTTGAATTTGACAATCCAGATCCTCCTTAAACAAGGAC
AAGTAGAGCTGGAGAATTTCCAGTTCCTGCTGGAGTATCCTGATGCAATCCTCATCAACA
AGAACATAATTGAAGACTTGAATTCTGTGATTCGGACTCAAGGACAAAAGAAAGTTGCTA
GCATGATGGAAAGTAAAAATGTTCATAAAGGAATATTTCAGATTGAGTGGGAACATAAGA
AAATGGAGATGGAAATGGAAGATCTAAATCAGAAGGCTTGGGATATTCAGATGCTGTTTT
TTTCAAGAGATCGTCAAAAGTTCCTAAATGAACCAAACTATGAGACTCTGATTGCCATTC
AAATTGGAATAATGGAGCAAACCATTGCTGTTTTAGATAAGACCCACAAAAAGAATGTGG
AAAACTGCAAAAAACTACTTAAAAAACTGGGAAGGTGCAGCAGTCAAAAAGATGTAGCAA
ATTATACTCTAAGCTGCAGCTTACGAGAAGAGTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GNGAAGACAAAGTGAAATTCCAGTTGAATTTGACAATCCAGATCCTCCTTAAACAAGGAC
AAGTAGAGCTGGAGAATTTCCAGTTCCTGCTGGAGTATCCTGATGCAATCCTCATCAACA
AGAACATAATTGAAGACTTGAATTCTGTGATTCGGACTCAAGGACAAAAGAAAGTTGCTA
GCATGATGGAAAGTAAAAATGTTCATAAAGGAATATTTCAGATTGAGTGGGAACATAAGA
AAATGGAGATGGAAATGGAAGATCTAAATCAGAAGGCTTGGGATATTCAGATGCTGTTTT
TTTCAAGAGATCGTCAAAAGTTCCTAAATGAACCAAACTATGAGACTCTGATTGCCATTC
AAATTGGAATAATGGAGCAAACCATTGCTGTTTTAGATAAGACCCACAAAAAGAATGTGG
AAAACTGCAAAAAACTACTTAAAAAACTGGGAAGGTGCAGCAGTCAAAAAGATGTAGCAA
ATTATACTCTAAGCTGCAGCTTACGAGAAGAGTTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-121, - strand, RNAz p=0.95697
               

               
               20-138, - strand, RNAz p=0.96067

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.95697
               

               
               20-138, - strand, RNAz p=0.96067

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-155, gnl|bosTau2|chr26 (16160579-16160731)
               

               
               3-155, gnl|canFam2|chr28 (19456971-19457479)
               

               
               3-155, gnl|dasNov1|scaffold_16812 (44628-44136)
               

               
               3-155, gnl|galGal2|chr6 (23263358-23263820)
               

               
               3-155, gnl|hg17|chr10 (105890573-105891079)
               

               
               3-155, gnl|Hg17|chr10 (105890742-105890590)
               

               
               3-155, gnl|loxAfr1|scaffold_5973 (11275-10810)
               

               
               3-155, gnl|mm7|chr19 (47645933-47646397)
               

               
               3-155, gnl|Mm7|chr19 (47646093-47645941)
               

               
               3-155, gnl|monDom2|scaffold_14 (59001500-59000985)
               

               
               3-155, gnl|panTro1|chr8 (107692637-107693143)
               

               
               3-155, gnl|rheMac2|chr9 (103840478-103840969)
               

               
               3-155, gnl|rn3|chr1 (253378698-253379172)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-155, gnl|bosTau2|chr26 (16160579-16160731)
               

               
               3-155, gnl|canFam2|chr28 (19456971-19457479)
               

               
               3-155, gnl|dasNov1|scaffold_16812 (44628-44136)
               

               
               3-155, gnl|galGal2|chr6 (23263358-23263820)
               

               
               3-155, gnl|hg17|chr10 (105890573-105891079)
               

               
               3-155, gnl|Hg17|chr10 (105890742-105890590)
               

               
               3-155, gnl|loxAfr1|scaffold_5973 (11275-10810)
               

               
               3-155, gnl|mm7|chr19 (47645933-47646397)
               

               
               3-155, gnl|Mm7|chr19 (47646093-47645941)
               

               
               3-155, gnl|monDom2|scaffold_14 (59001500-59000985)
               

               
               3-155, gnl|panTro1|chr8 (107692637-107693143)
               

               
               3-155, gnl|rheMac2|chr9 (103840478-103840969)
               

               
               3-155, gnl|rn3|chr1 (253378698-253379172)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	3-121, - strand, RNAz p=0.95697
	20-138, - strand, RNAz p=0.96067

	3-155, gnl\|bosTau2\|chr26 (16160579-16160731)
	3-155, gnl\|canFam2\|chr28 (19456971-19457479)
	3-155, gnl\|dasNov1\|scaffold_16812 (44628-44136)
	3-155, gnl\|galGal2\|chr6 (23263358-23263820)
	3-155, gnl\|hg17\|chr10 (105890573-105891079)
	3-155, gnl\|Hg17\|chr10 (105890742-105890590)
	3-155, gnl\|loxAfr1\|scaffold_5973 (11275-10810)
	3-155, gnl\|mm7\|chr19 (47645933-47646397)
	3-155, gnl\|Mm7\|chr19 (47646093-47645941)
	3-155, gnl\|monDom2\|scaffold_14 (59001500-59000985)
	3-155, gnl\|panTro1\|chr8 (107692637-107693143)
	3-155, gnl\|rheMac2\|chr9 (103840478-103840969)
	3-155, gnl\|rn3\|chr1 (253378698-253379172)