Non-Coding RNA Search

Ss1.1-Pig2-42P20.5

Sequence:


               
               AAAGATGCCATCAGGCTTTTGGATTCTGTGCCTCCTACTGCGATTGGTCACTTCAAGCAG
TCAGCTGAGAAGCTGATAGAGGAGAAGGGAGCTGTGGAAGCCCTGGCAGCAGCCCTGGCC
CATATTTCAGGTGCCACATCAGTGGACCAGCGCTCTTTGATCAACTCAGATGCGGGTTTT
GTGACCATGATCTTGCGGTGCTCAATTGAAATGCCAAACATTAGTTATGCTTGGAGGGAA
CTTAAAGAGCAACTGGGTGAGGATATTGATTCCAAAGTAAAGGGAATGGTCTTTCTCAAA
GGAAAGCAGGTAAGGCTGGGGCGGGGCGGGGCTCTGTTGTGATCTCACTTTGGTTCCGTA
GCTTCTCCCTGTTCTCTGGGGATAAGGCACATCGTCTTCTCCACGCAGTGTCACCCATGA
CCCACAGCTGCCACTTAGTCGCTGACAGTTTCCCTGTCTGTATCTCTAGCCTGAACCATC
TGTAGGAAGTGTCAGATTTGATGATCCAGCTGTTTCCCTGACTTCTCCGTCCAGATGGGG
TTTCTTAAGCAACTTAAAACAAACTTAGTCAAAACTGAATTCAAAATTTAAAATCTTGCC
TTCCAAACCTGGTGTTCTTCTGACTTCTGCACTCGGTTAGTGGCGTAGACTCACACAGCA
GTTCTCAAACATTTAGTCTCATGACCTCTTTACATTCGTAACAAATGTTGGGGACACTGA
AAAGTGTCTGTTGATGTGAGTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGATGCCATCAGGCTTTTGGATTCTGTGCCTCCTACTGCGATTGGTCACTTCAAGCAG
TCAGCTGAGAAGCTGATAGAGGAGAAGGGAGCTGTGGAAGCCCTGGCAGCAGCCCTGGCC
CATATTTCAGGTGCCACATCAGTGGACCAGCGCTCTTTGATCAACTCAGATGCGGGTTTT
GTGACCATGATCTTGCGGTGCTCAATTGAAATGCCAAACATTAGTTATGCTTGGAGGGAA
CTTAAAGAGCAACTGGGTGAGGATATTGATTCCAAAGTAAAGGGAATGGTCTTTCTCAAA
GGAAAGCAGGTAAGGCTGGGGCGGGGCGGGGCTCTGTTGTGATCTCACTTTGGTTCCGTA
GCTTCTCCCTGTTCTCTGGGGATAAGGCACATCGTCTTCTCCACGCAGTGTCACCCATGA
CCCACAGCTGCCACTTAGTCGCTGACAGTTTCCCTGTCTGTATCTCTAGCCTGAACCATC
TGTAGGAAGTGTCAGATTTGATGATCCAGCTGTTTCCCTGACTTCTCCGTCCAGATGGGG
TTTCTTAAGCAACTTAAAACAAACTTAGTCAAAACTGAATTCAAAATTTAAAATCTTGCC
TTCCAAACCTGGTGTTCTTCTGACTTCTGCACTCGGTTAGTGGCGTAGACTCACACAGCA
GTTCTCAAACATTTAGTCTCATGACCTCTTTACATTCGTAACAAATGTTGGGGACACTGA
AAAGTGTCTGTTGATGTGAGTTAC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               2-309, gnl|bosTau2|chr11 (69863347-69863040)
               

               
               2-309, gnl|Hg17|chr10 (70404493-70411298)
               

               
               2-309, gnl|Mm7|chr10 (62106264-62103421)
               


               
               391-743, gnl|bosTau2|chr28 (16438482-16438126)
               

               
               391-743, gnl|Hg17|chr10 (70408846-70409235)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-309, gnl|bosTau2|chr11 (69863347-69863040)
               

               
               2-309, gnl|Hg17|chr10 (70404493-70411298)
               

               
               2-309, gnl|Mm7|chr10 (62106264-62103421)
               


               
               391-743, gnl|bosTau2|chr28 (16438482-16438126)
               

               
               391-743, gnl|Hg17|chr10 (70408846-70409235)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               spl (0.143184)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               spl (0.143184)
               

               
               eje (0.0988338)

	2-309, gnl\|bosTau2\|chr11 (69863347-69863040)
	2-309, gnl\|Hg17\|chr10 (70404493-70411298)
	2-309, gnl\|Mm7\|chr10 (62106264-62103421)

	391-743, gnl\|bosTau2\|chr28 (16438482-16438126)
	391-743, gnl\|Hg17\|chr10 (70408846-70409235)