Ss1.1-Pig2-43P19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTTCTCACTGGAGCTTCAGGCTCGCTGAGACGCTTCCCCGCGCGAAAACATGAGTGAC TCCGCGGGAGAGCGCCCCCGGCTCCGGTGCTACCCGGAGCTCCCCGTTTGGGTGGTGGAG GATCATCAGGAGGTTCTGCCTTTTATATACCGGGCCATTGGCTCAAAGCATCTTCCTGCA AGTAACATAAGTTTTGTGCATTTTGATTCACATCCAGACCTCCTTATTCCTGTGAATATG CCAGCTGACACTGTATTTGATAAGGAAACGCTTTTTGGAGAATTAAGTATTGAAAATTGG ATTATGCCTGCAGTTTATGCTGGCCATTTTTCTCACGTAATATGGCTTCATCCCACATGG GCTGAGCAAATCAGAGAGGGCAAACATCACTTTTTGGTCGGCAAAGACACTTCTACAACA ACAATCAGGGTTACAAGTACAGATCATTACTTCCTAAGCGATGGTCTTTATGTAACTGAA GACCAGCTAGAGAACCCAAAACCTTTACAATTGGATGTGATTATAGTAAAACCTTATAAA CTCTGTAACAATCAAGAAGAAAAAGATACAGTGTCCTCTGCTAAGAAGCCAAAGCTAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTTCTCACTGGAGCTTCAGGCTCGCTGAGACGCTTCCCCGCGCGAAAACATGAGTGAC TCCGCGGGAGAGCGCCCCCGGCTCCGGTGCTACCCGGAGCTCCCCGTTTGGGTGGTGGAG GATCATCAGGAGGTTCTGCCTTTTATATACCGGGCCATTGGCTCAAAGCATCTTCCTGCA AGTAACATAAGTTTTGTGCATTTTGATTCACATCCAGACCTCCTTATTCCTGTGAATATG CCAGCTGACACTGTATTTGATAAGGAAACGCTTTTTGGAGAATTAAGTATTGAAAATTGG ATTATGCCTGCAGTTTATGCTGGCCATTTTTCTCACGTAATATGGCTTCATCCCACATGG GCTGAGCAAATCAGAGAGGGCAAACATCACTTTTTGGTCGGCAAAGACACTTCTACAACA ACAATCAGGGTTACAAGTACAGATCATTACTTCCTAAGCGATGGTCTTTATGTAACTGAA GACCAGCTAGAGAACCCAAAACCTTTACAATTGGATGTGATTATAGTAAAACCTTATAAA CTCTGTAACAATCAAGAAGAAAAAGATACAGTGTCCTCTGCTAAGAAGCCAAAGCTAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 426-544, + strand, RNAz p=0.741716 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 426-544, + strand, RNAz p=0.741716 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 131-283, gnl|bosTau2|chr20 (27365810-27365658) | |
| 131-283, gnl|Hg17|chr5 (31570134-31570286) | |
| 131-283, gnl|Mm7|chr15 (12883670-12883518) | |
| 426-599, gnl|bosTau2|chr20 (27360300-27360127) | |
| 426-599, gnl|canFam2|chr4 (78964224-78964076) | |
| 426-599, gnl|danRer3|chrUn (60674670-60674527) | |
| 426-599, gnl|dasNov1|scaffold_178574 (2035-2187) | |
| 426-599, gnl|echTel1|scaffold_191891 (7510-7363) | |
| 426-599, gnl|fr1|chrUn (183065362-183065491) | |
| 426-599, gnl|galGal2|chr2 (68916355-68916181) | |
| 426-599, gnl|hg17|chr5 (31574103-31574251) | |
| 426-599, gnl|Hg17|chr5 (31574121-31574294) | |
| 426-599, gnl|loxAfr1|scaffold_17328 (45786-45935) | |
| 426-599, gnl|mm7|chr15 (12878265-12878121) | |
| 426-599, gnl|Mm7|chr15 (12878249-12878076) | |
| 426-599, gnl|monDom2|scaffold_4 (62581047-62581192) | |
| 426-599, gnl|panTro1|chr4 (85827122-85826974) | |
| 426-599, gnl|rheMac2|chr6 (31609637-31609785) | |
| 426-599, gnl|rn3|chr2 (62256713-62256569) | |
| 426-599, gnl|tetNig1|chrUn_random (18938603-18938729) | |
| 426-599, gnl|xenTro1|scaffold_78 (2365285-2365135) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-283, gnl|bosTau2|chr20 (27365810-27365658) | |
| 131-283, gnl|Hg17|chr5 (31570134-31570286) | |
| 131-283, gnl|Mm7|chr15 (12883670-12883518) | |
| 426-599, gnl|bosTau2|chr20 (27360300-27360127) | |
| 426-599, gnl|canFam2|chr4 (78964224-78964076) | |
| 426-599, gnl|danRer3|chrUn (60674670-60674527) | |
| 426-599, gnl|dasNov1|scaffold_178574 (2035-2187) | |
| 426-599, gnl|echTel1|scaffold_191891 (7510-7363) | |
| 426-599, gnl|fr1|chrUn (183065362-183065491) | |
| 426-599, gnl|galGal2|chr2 (68916355-68916181) | |
| 426-599, gnl|hg17|chr5 (31574103-31574251) | |
| 426-599, gnl|Hg17|chr5 (31574121-31574294) | |
| 426-599, gnl|loxAfr1|scaffold_17328 (45786-45935) | |
| 426-599, gnl|mm7|chr15 (12878265-12878121) | |
| 426-599, gnl|Mm7|chr15 (12878249-12878076) | |
| 426-599, gnl|monDom2|scaffold_4 (62581047-62581192) | |
| 426-599, gnl|panTro1|chr4 (85827122-85826974) | |
| 426-599, gnl|rheMac2|chr6 (31609637-31609785) | |
| 426-599, gnl|rn3|chr2 (62256713-62256569) | |
| 426-599, gnl|tetNig1|chrUn_random (18938603-18938729) | |
| 426-599, gnl|xenTro1|scaffold_78 (2365285-2365135) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |