Non-Coding RNA Search

Ss1.1-Pig2-44E10.5

Sequence:


               
               CCACAGCTCTTTCTGCAGGACAAGCATGGCCCTTGGGAGAGCACGGCTGCTGCTGCTCTT
GGTGTGTGTGGCTGTCACATGGGCGGCCCGGCCTGATCTCCTCAACATCTGCATGGATGC
CAAGCACCACAAGACCAAGCCAGGCCCGGAAGATGGCCTGCATGAGCAGTGCAGCCCCTG
GGAGATGAACGCCTGCTGCTCGGTCAACACCAGCCAAGAAGCCCATAACGACATCTCCTA
CCTGTACAAATTCAACTGGGAGCACTGCGGCAAGATGAAGCCGGCCTGCAAGCGCCACTT
CATTCAAGACACCTGTCTCTATGAGTGCTCGCCCAACCTGGGGCCCTGGATCCAGGAGGT
GAACCAGAAGTGGCGCAGAGAGCGGATCCTGAACGTGCCCCTCTGCAAAGAGGACTGTCA
GAACTGGTGGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAACTGGCACGAGGGCTG
GAACTGGAGCTCAGGGTATAACCGGTGCCCCGCGAACGCCGCCTGCCACCCCTTCGACTT
CTACTTCCCCACGCCTGCTGCCCTGTGCAGCCAGATCTGGAGCAACTCCTACAAACAAAG
CAACTACAGCCGGGGCAGCGGCCGCTGCATCCAGATGTGGTTCGACCCGGAACAGGGCAA
CCCCAACGAGGTGGTGGCGAGATACTACGCCCAGATCATGAGTGGCGCTGGGCTCTCCGA
GGCCTGGCCTCTCCAGTTCGGCCTGGCCCTGACGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACAGCTCTTTCTGCAGGACAAGCATGGCCCTTGGGAGAGCACGGCTGCTGCTGCTCTT
GGTGTGTGTGGCTGTCACATGGGCGGCCCGGCCTGATCTCCTCAACATCTGCATGGATGC
CAAGCACCACAAGACCAAGCCAGGCCCGGAAGATGGCCTGCATGAGCAGTGCAGCCCCTG
GGAGATGAACGCCTGCTGCTCGGTCAACACCAGCCAAGAAGCCCATAACGACATCTCCTA
CCTGTACAAATTCAACTGGGAGCACTGCGGCAAGATGAAGCCGGCCTGCAAGCGCCACTT
CATTCAAGACACCTGTCTCTATGAGTGCTCGCCCAACCTGGGGCCCTGGATCCAGGAGGT
GAACCAGAAGTGGCGCAGAGAGCGGATCCTGAACGTGCCCCTCTGCAAAGAGGACTGTCA
GAACTGGTGGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAACTGGCACGAGGGCTG
GAACTGGAGCTCAGGGTATAACCGGTGCCCCGCGAACGCCGCCTGCCACCCCTTCGACTT
CTACTTCCCCACGCCTGCTGCCCTGTGCAGCCAGATCTGGAGCAACTCCTACAAACAAAG
CAACTACAGCCGGGGCAGCGGCCGCTGCATCCAGATGTGGTTCGACCCGGAACAGGGCAA
CCCCAACGAGGTGGTGGCGAGATACTACGCCCAGATCATGAGTGGCGCTGGGCTCTCCGA
GGCCTGGCCTCTCCAGTTCGGCCTGGCCCTGACGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9XSH1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9XSH1_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-359, gnl|bosTau2|chr13 (21284143-21284507)
               

               
               1-359, gnl|Hg17|chr11 (71580840-71584152)
               

               
               1-359, gnl|Mm7|chr7 (97890082-97887057)
               


               
               492-745, gnl|bosTau2|chr15 (29877778-29877525)
               

               
               492-745, gnl|Hg17|chr11 (71584586-71584839)
               

               
               492-745, gnl|Mm7|chr7 (97904993-97904740)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-359, gnl|bosTau2|chr13 (21284143-21284507)
               

               
               1-359, gnl|Hg17|chr11 (71580840-71584152)
               

               
               1-359, gnl|Mm7|chr7 (97890082-97887057)
               


               
               492-745, gnl|bosTau2|chr15 (29877778-29877525)
               

               
               492-745, gnl|Hg17|chr11 (71584586-71584839)
               

               
               492-745, gnl|Mm7|chr7 (97904993-97904740)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (1.19506)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (1.19506)

	1-359, gnl\|bosTau2\|chr13 (21284143-21284507)
	1-359, gnl\|Hg17\|chr11 (71580840-71584152)
	1-359, gnl\|Mm7\|chr7 (97890082-97887057)

	492-745, gnl\|bosTau2\|chr15 (29877778-29877525)
	492-745, gnl\|Hg17\|chr11 (71584586-71584839)
	492-745, gnl\|Mm7\|chr7 (97904993-97904740)