Ss1.1-Pig2-44F15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTCACGTCCCGCCTGGTGTCCCCTGCGCAGCCCATCCCTGATGCGGCCCAGCCTGCA AAGACGCCTGCAGGCGATGCGGACCCCAGCGACGGCTTCTCCTCCCCTCCCAGCTCACTG ACTTCACCCTCCACGCCGTCCAGCCTGGGGCCCTCACTCTCCAGCACCAGCGGCATCGGC ACCAGCCCCAGCCAGAGGTCCCTGCAGAGCCTGCTAGGCCCCAGTTCCAAGTTCCGGCAC ACTCAGGGCACCGTCCTGCATCGTGACAGCCACATCACCAACCTCAAGGGGCTCAACCTC ACCACACCCGGCGAGAGCGACGGCTTCTGTGCCAACCGGCTGCGTGTGGCCGTGCCCCTG CTCAGCAGTGGGGGGCAGGTGGCTGTGCTCGAGCTGAGGAAGCCTGGCCGTCTGCCTGAC ACAGCGCTGCCCACGCTGCAGAATGGGGCAGCCGTGACTGATCTGGCCTGGGACCCCTTC GACCTCCACCGCCTCGCTGTGGCTGGTGAGGACGCCAGGATCCGGCTGTGGCGGGTGCCC CCAGAGGGCCTGGAAGAGGTGCTCACCACGCCCGAGGCCGTGCTCACAGGCCACACGGAG AAGATCTATTCTCTGCGCTTCCACCCGCTGGCGGCTGATGTGCTGGCCTCCTCTTCCTAT GACCTTACCATTCGGATCTGGGACCTTCAGGCCGGAGTTGAGCGTCTGAGGCTGCAGGGC CACCGGGATCAGATCTTGGGCCTGGCCTGGAGTCCCAATGGGCAGCAGCTGGCCACGGTC TGCAAAGACGGGCGCCTGCGGGTCTACGAGCCCCGAAGTAGCCCTGAGCCCTTGCAGGAA GGCCCAGGGCCTGAGGGGGCCCGTGGAGCCCGCGTTGTCTGGGTGTGTGATGGTCACTGC CTTCTGGTGTCGGGCTTTGACAGCCGAAGTGAGCGCCAGCTGCTCCTGTTCTCGGCCGAG GCCTTGGCCAGTGGCCCCTTGGCAGTGCTGGGGCTGGATGTGGCTCCCTCAACACTGCTG CCCAGCTACGACCCAGATACCAGCCTGGTGCTGCTCACGGGCAAGGGCGATACCCGCGTG TTCCTGTATGAGCTGCTCCCCGAGGCCCCCTTCTTTCTGGAGTGCAACAGCTTCACATCG CCCGACCCCCACAAGGGNTTCGTTCTCCTGCCCAAGACGGAGTGTGAGGTTCGGGAGGTG GAGTTCGCCCGCTGCCTGCGACTTCGCCAGACCTCCCTGGAGCGCGTCGCATTCCGGCTG CACCGAGTNAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTCACGTCCCGCCTGGTGTCCCCTGCGCAGCCCATCCCTGATGCGGCCCAGCCTGCA AAGACGCCTGCAGGCGATGCGGACCCCAGCGACGGCTTCTCCTCCCCTCCCAGCTCACTG ACTTCACCCTCCACGCCGTCCAGCCTGGGGCCCTCACTCTCCAGCACCAGCGGCATCGGC ACCAGCCCCAGCCAGAGGTCCCTGCAGAGCCTGCTAGGCCCCAGTTCCAAGTTCCGGCAC ACTCAGGGCACCGTCCTGCATCGTGACAGCCACATCACCAACCTCAAGGGGCTCAACCTC ACCACACCCGGCGAGAGCGACGGCTTCTGTGCCAACCGGCTGCGTGTGGCCGTGCCCCTG CTCAGCAGTGGGGGGCAGGTGGCTGTGCTCGAGCTGAGGAAGCCTGGCCGTCTGCCTGAC ACAGCGCTGCCCACGCTGCAGAATGGGGCAGCCGTGACTGATCTGGCCTGGGACCCCTTC GACCTCCACCGCCTCGCTGTGGCTGGTGAGGACGCCAGGATCCGGCTGTGGCGGGTGCCC CCAGAGGGCCTGGAAGAGGTGCTCACCACGCCCGAGGCCGTGCTCACAGGCCACACGGAG AAGATCTATTCTCTGCGCTTCCACCCGCTGGCGGCTGATGTGCTGGCCTCCTCTTCCTAT GACCTTACCATTCGGATCTGGGACCTTCAGGCCGGAGTTGAGCGTCTGAGGCTGCAGGGC CACCGGGATCAGATCTTGGGCCTGGCCTGGAGTCCCAATGGGCAGCAGCTGGCCACGGTC TGCAAAGACGGGCGCCTGCGGGTCTACGAGCCCCGAAGTAGCCCTGAGCCCTTGCAGGAA GGCCCAGGGCCTGAGGGGGCCCGTGGAGCCCGCGTTGTCTGGGTGTGTGATGGTCACTGC CTTCTGGTGTCGGGCTTTGACAGCCGAAGTGAGCGCCAGCTGCTCCTGTTCTCGGCCGAG GCCTTGGCCAGTGGCCCCTTGGCAGTGCTGGGGCTGGATGTGGCTCCCTCAACACTGCTG CCCAGCTACGACCCAGATACCAGCCTGGTGCTGCTCACGGGCAAGGGCGATACCCGCGTG TTCCTGTATGAGCTGCTCCCCGAGGCCCCCTTCTTTCTGGAGTGCAACAGCTTCACATCG CCCGACCCCCACAAGGGNTTCGTTCTCCTGCCCAAGACGGAGTGTGAGGTTCGGGAGGTG GAGTTCGCCCGCTGCCTGCGACTTCGCCAGACCTCCCTGGAGCGCGTCGCATTCCGGCTG CACCGAGTNAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 216-399, gnl|bosTau2|chr25 (4306305-4306122) | |
| 216-399, gnl|canFam2|chr6 (40074981-40074792) | |
| 216-399, gnl|danRer3|chr14 (20852944-20853127) | |
| 216-399, gnl|echTel1|scaffold_310793 (56278-56089) | |
| 216-399, gnl|fr1|chrUn (108294790-108294601) | |
| 216-399, gnl|galGal2|chr14 (14528369-14528553) | |
| 216-399, gnl|hg17|chr16 (4351977-4352166) | |
| 216-399, gnl|Hg17|chr16 (4352164-4351981) | |
| 216-399, gnl|mm7|chr16 (4305018-4305207) | |
| 216-399, gnl|Mm7|chr16 (4305205-4305022) | |
| 216-399, gnl|monDom2|scaffold_49 (4454127-4453941) | |
| 216-399, gnl|oryCun1|scaffold_188246 (5496-5306) | |
| 216-399, gnl|panTro1|chr18 (4230093-4230282) | |
| 216-399, gnl|rheMac2|chr20 (4511295-4511484) | |
| 216-399, gnl|rn3|chr10 (11064271-11064082) | |
| 216-399, gnl|tetNig1|chr3 (9800576-9800760) | |
| 216-399, gnl|xenTro1|scaffold_12 (2457260-2457078) | |
| 587-732, gnl|bosTau2|chr25 (4305256-4305111) | |
| 587-732, gnl|canFam2|chr6 (40075996-40075818) | |
| 587-732, gnl|danRer3|chr14 (20852331-20852502) | |
| 587-732, gnl|echTel1|scaffold_217900 (4419-4584) | |
| 587-732, gnl|fr1|chrUn (108295470-108295316) | |
| 587-732, gnl|galGal2|chr14 (14527710-14527902) | |
| 587-732, gnl|hg17|chr16 (4350932-4351108) | |
| 587-732, gnl|Hg17|chr16 (4351090-4350945) | |
| 587-732, gnl|mm7|chr16 (4303747-4303924) | |
| 587-732, gnl|Mm7|chr16 (4303905-4303760) | |
| 587-732, gnl|monDom2|scaffold_49 (4456230-4456053) | |
| 587-732, gnl|oryCun1|scaffold_188246 (6454-6283) | |
| 587-732, gnl|panTro1|chr18 (4229048-4229224) | |
| 587-732, gnl|rheMac2|chr20 (4510251-4510427) | |
| 587-732, gnl|rn3|chr10 (11065275-11065098) | |
| 587-732, gnl|tetNig1|chr3 (9799820-9799978) | |
| 587-732, gnl|xenTro1|scaffold_12 (2460619-2460461) | |
| 921-1066, gnl|bosTau2|chr25 (4303744-4303599) | |
| 921-1066, gnl|canFam2|chr6 (40077516-40077412) | |
| 921-1066, gnl|danRer3|chr14 (20848225-20848327) | |
| 921-1066, gnl|dasNov1|scaffold_51219 (611-507) | |
| 921-1066, gnl|echTel1|scaffold_217900 (3589-3693) | |
| 921-1066, gnl|fr1|chrUn (108296117-108296016) | |
| 921-1066, gnl|galGal2|chr14 (14526938-14527042) | |
| 921-1066, gnl|hg17|chr16 (4349475-4349579) | |
| 921-1066, gnl|Hg17|chr16 (4349626-4349481) | |
| 921-1066, gnl|loxAfr1|scaffold_33588 (45077-45178) | |
| 921-1066, gnl|mm7|chr16 (4302130-4302234) | |
| 921-1066, gnl|Mm7|chr16 (4302281-4302136) | |
| 921-1066, gnl|monDom2|scaffold_49 (4458237-4458133) | |
| 921-1066, gnl|oryCun1|scaffold_188246 (7826-7722) | |
| 921-1066, gnl|panTro1|chr18 (4227472-4227576) | |
| 921-1066, gnl|rheMac2|chr20 (4508450-4508554) | |
| 921-1066, gnl|rn3|chr10 (11066887-11066783) | |
| 921-1066, gnl|tetNig1|chr3 (9799216-9799318) | |
| 921-1066, gnl|xenTro1|scaffold_12 (2461432-2461331) | |
| 1133-1272, gnl|bosTau2|chr25 (4302503-4302365) | |
| 1133-1272, gnl|canFam2|chr6 (40078414-40078307) | |
| 1133-1272, gnl|danRer3|chr14 (20845506-20845613) | |
| 1133-1272, gnl|echTel1|scaffold_217900 (1523-1630) | |
| 1133-1272, gnl|fr1|chrUn (108296481-108296376) | |
| 1133-1272, gnl|galGal2|chr14 (14526584-14526674) | |
| 1133-1272, gnl|hg17|chr16 (4348362-4348469) | |
| 1133-1272, gnl|Hg17|chr16 (4348507-4348369) | |
| 1133-1272, gnl|loxAfr1|scaffold_40859 (17641-17748) | |
| 1133-1272, gnl|mm7|chr16 (4300822-4300929) | |
| 1133-1272, gnl|Mm7|chr16 (4300968-4300829) | |
| 1133-1272, gnl|monDom2|scaffold_49 (4458934-4458827) | |
| 1133-1272, gnl|rheMac2|chr20 (4507335-4507442) | |
| 1133-1272, gnl|rn3|chr10 (11068172-11068065) | |
| 1133-1272, gnl|tetNig1|chr3 (9798860-9798965) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 216-399, gnl|bosTau2|chr25 (4306305-4306122) | |
| 216-399, gnl|canFam2|chr6 (40074981-40074792) | |
| 216-399, gnl|danRer3|chr14 (20852944-20853127) | |
| 216-399, gnl|echTel1|scaffold_310793 (56278-56089) | |
| 216-399, gnl|fr1|chrUn (108294790-108294601) | |
| 216-399, gnl|galGal2|chr14 (14528369-14528553) | |
| 216-399, gnl|hg17|chr16 (4351977-4352166) | |
| 216-399, gnl|Hg17|chr16 (4352164-4351981) | |
| 216-399, gnl|mm7|chr16 (4305018-4305207) | |
| 216-399, gnl|Mm7|chr16 (4305205-4305022) | |
| 216-399, gnl|monDom2|scaffold_49 (4454127-4453941) | |
| 216-399, gnl|oryCun1|scaffold_188246 (5496-5306) | |
| 216-399, gnl|panTro1|chr18 (4230093-4230282) | |
| 216-399, gnl|rheMac2|chr20 (4511295-4511484) | |
| 216-399, gnl|rn3|chr10 (11064271-11064082) | |
| 216-399, gnl|tetNig1|chr3 (9800576-9800760) | |
| 216-399, gnl|xenTro1|scaffold_12 (2457260-2457078) | |
| 587-732, gnl|bosTau2|chr25 (4305256-4305111) | |
| 587-732, gnl|canFam2|chr6 (40075996-40075818) | |
| 587-732, gnl|danRer3|chr14 (20852331-20852502) | |
| 587-732, gnl|echTel1|scaffold_217900 (4419-4584) | |
| 587-732, gnl|fr1|chrUn (108295470-108295316) | |
| 587-732, gnl|galGal2|chr14 (14527710-14527902) | |
| 587-732, gnl|hg17|chr16 (4350932-4351108) | |
| 587-732, gnl|Hg17|chr16 (4351090-4350945) | |
| 587-732, gnl|mm7|chr16 (4303747-4303924) | |
| 587-732, gnl|Mm7|chr16 (4303905-4303760) | |
| 587-732, gnl|monDom2|scaffold_49 (4456230-4456053) | |
| 587-732, gnl|oryCun1|scaffold_188246 (6454-6283) | |
| 587-732, gnl|panTro1|chr18 (4229048-4229224) | |
| 587-732, gnl|rheMac2|chr20 (4510251-4510427) | |
| 587-732, gnl|rn3|chr10 (11065275-11065098) | |
| 587-732, gnl|tetNig1|chr3 (9799820-9799978) | |
| 587-732, gnl|xenTro1|scaffold_12 (2460619-2460461) | |
| 921-1066, gnl|bosTau2|chr25 (4303744-4303599) | |
| 921-1066, gnl|canFam2|chr6 (40077516-40077412) | |
| 921-1066, gnl|danRer3|chr14 (20848225-20848327) | |
| 921-1066, gnl|dasNov1|scaffold_51219 (611-507) | |
| 921-1066, gnl|echTel1|scaffold_217900 (3589-3693) | |
| 921-1066, gnl|fr1|chrUn (108296117-108296016) | |
| 921-1066, gnl|galGal2|chr14 (14526938-14527042) | |
| 921-1066, gnl|hg17|chr16 (4349475-4349579) | |
| 921-1066, gnl|Hg17|chr16 (4349626-4349481) | |
| 921-1066, gnl|loxAfr1|scaffold_33588 (45077-45178) | |
| 921-1066, gnl|mm7|chr16 (4302130-4302234) | |
| 921-1066, gnl|Mm7|chr16 (4302281-4302136) | |
| 921-1066, gnl|monDom2|scaffold_49 (4458237-4458133) | |
| 921-1066, gnl|oryCun1|scaffold_188246 (7826-7722) | |
| 921-1066, gnl|panTro1|chr18 (4227472-4227576) | |
| 921-1066, gnl|rheMac2|chr20 (4508450-4508554) | |
| 921-1066, gnl|rn3|chr10 (11066887-11066783) | |
| 921-1066, gnl|tetNig1|chr3 (9799216-9799318) | |
| 921-1066, gnl|xenTro1|scaffold_12 (2461432-2461331) | |
| 1133-1272, gnl|bosTau2|chr25 (4302503-4302365) | |
| 1133-1272, gnl|canFam2|chr6 (40078414-40078307) | |
| 1133-1272, gnl|danRer3|chr14 (20845506-20845613) | |
| 1133-1272, gnl|echTel1|scaffold_217900 (1523-1630) | |
| 1133-1272, gnl|fr1|chrUn (108296481-108296376) | |
| 1133-1272, gnl|galGal2|chr14 (14526584-14526674) | |
| 1133-1272, gnl|hg17|chr16 (4348362-4348469) | |
| 1133-1272, gnl|Hg17|chr16 (4348507-4348369) | |
| 1133-1272, gnl|loxAfr1|scaffold_40859 (17641-17748) | |
| 1133-1272, gnl|mm7|chr16 (4300822-4300929) | |
| 1133-1272, gnl|Mm7|chr16 (4300968-4300829) | |
| 1133-1272, gnl|monDom2|scaffold_49 (4458934-4458827) | |
| 1133-1272, gnl|rheMac2|chr20 (4507335-4507442) | |
| 1133-1272, gnl|rn3|chr10 (11068172-11068065) | |
| 1133-1272, gnl|tetNig1|chr3 (9798860-9798965) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |