Non-Coding RNA Search

Ss1.1-Pig2-44H07.5

Sequence:


               
               ATGATGCACAAATCCCCCGGGCAGAGAGGAGAAAGTCTCAGCACTGGGATGAAATGAATA
TCCTGGCCACCTACCACCCTGCTGACAAGGACTATGGATTTATGAAGGTGGATGAGCCCA
GCACCCCCTACCACAGACTGCAGGACAGCGAAGAGGACCTGCTGGCGGGGACCTCCTACG
CAATGACTCCTGAGGAGCTGGCAGAGAGGTTAGCAACAATGGATGATTTCTGCCCCAAGG
TCCTTCTGTACAGTGATCACAAAAGCTTCGGCTCTTCAGACAACTTTTCCAAGACACAAC
CCAGCGATTTTGAAAAGCGCCGCAAGGCCCATTACAATGAAGGAAAGTACCTCAAGGCTC
AAAAAAACCTGCCCTTGGATCCTAACAAGGGCAGCCACGTGGGTGGCCTCGGTGTGAGCA
GTGCCAGTCGAGGTGTGATGCTGGACCCAGAGCTCATGCCTGCGGAGAGAAGTGGGGCAG
GAGGACTGACCAGAGGAGTCAAAGATGAGATTGGCCTGGCGGCCAGGAACCACATCCTAG
AAGCCAAAGGTGGCCGTAAGAGTCAGATTGATTTGAGGGACTCCTCGGATTCCCCTGCCT
TCAGAAGTCAGTCCCAAGTGTCAGCCACCCCCGTCACGGAGAAGGAGATGGAGCTGCAGC
GCAAGGAGTATTACAGGAAAGGGAGGTACCTCAGGTGTTCTCCCCACCCTGAGCTGGAGG
AGGTGACAGTGACACCAGTGAAGCCTGGTCCTGCCCCGCCCTTCAAAGACAGCGGGTCCC
AAGCAATGTCTGGCTGGTGTCAGTGGCTGGTGTCCAAGGGGCTGAACTGGCAAAGCGCAG
AAGGCTCAGAGAGGGATGCTGGACGCCACCCAAACCTCCCAAGCCAGGACCAGCACAGAC
ATGAAACCCTGCGGCTTCGATGGACTCAGGAGGAGGAAACCAGGCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATGCACAAATCCCCCGGGCAGAGAGGAGAAAGTCTCAGCACTGGGATGAAATGAATA
TCCTGGCCACCTACCACCCTGCTGACAAGGACTATGGATTTATGAAGGTGGATGAGCCCA
GCACCCCCTACCACAGACTGCAGGACAGCGAAGAGGACCTGCTGGCGGGGACCTCCTACG
CAATGACTCCTGAGGAGCTGGCAGAGAGGTTAGCAACAATGGATGATTTCTGCCCCAAGG
TCCTTCTGTACAGTGATCACAAAAGCTTCGGCTCTTCAGACAACTTTTCCAAGACACAAC
CCAGCGATTTTGAAAAGCGCCGCAAGGCCCATTACAATGAAGGAAAGTACCTCAAGGCTC
AAAAAAACCTGCCCTTGGATCCTAACAAGGGCAGCCACGTGGGTGGCCTCGGTGTGAGCA
GTGCCAGTCGAGGTGTGATGCTGGACCCAGAGCTCATGCCTGCGGAGAGAAGTGGGGCAG
GAGGACTGACCAGAGGAGTCAAAGATGAGATTGGCCTGGCGGCCAGGAACCACATCCTAG
AAGCCAAAGGTGGCCGTAAGAGTCAGATTGATTTGAGGGACTCCTCGGATTCCCCTGCCT
TCAGAAGTCAGTCCCAAGTGTCAGCCACCCCCGTCACGGAGAAGGAGATGGAGCTGCAGC
GCAAGGAGTATTACAGGAAAGGGAGGTACCTCAGGTGTTCTCCCCACCCTGAGCTGGAGG
AGGTGACAGTGACACCAGTGAAGCCTGGTCCTGCCCCGCCCTTCAAAGACAGCGGGTCCC
AAGCAATGTCTGGCTGGTGTCAGTGGCTGGTGTCCAAGGGGCTGAACTGGCAAAGCGCAG
AAGGCTCAGAGAGGGATGCTGGACGCCACCCAAACCTCCCAAGCCAGGACCAGCACAGAC
ATGAAACCCTGCGGCTTCGATGGACTCAGGAGGAGGAAACCAGGCAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               407-551, + strand, RNAz p=0.994147
               

               
               783-904, - strand, RNAz p=0.999207

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-551, + strand, RNAz p=0.994147
               

               
               783-904, - strand, RNAz p=0.999207

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               799-900, - strand, RNAmicro p=0.9999

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               799-900, - strand, RNAmicro p=0.9999

Aligned organism(s): 23 entry(ies)

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Aligned organism(s): 23 entry(ies)

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               27-136, gnl|bosTau2|chr19 (20891785-20891676)
               

               
               27-136, gnl|canFam2|chr5 (35285917-35286030)
               

               
               27-136, gnl|danRer3|chr22 (48084666-48084553)
               

               
               27-136, gnl|dasNov1|scaffold_187839 (4197-4084)
               

               
               27-136, gnl|echTel1|scaffold_310532 (93680-93567)
               

               
               27-136, gnl|fr1|chrUn (160257255-160257142)
               

               
               27-136, gnl|hg17|chr17 (7175970-7176083)
               

               
               27-136, gnl|Hg17|chr17 (7175970-7176079)
               

               
               27-136, gnl|loxAfr1|scaffold_38460 (41607-41494)
               

               
               27-136, gnl|mm7|chr11 (69981391-69981278)
               

               
               27-136, gnl|Mm7|chr11 (69981387-69981280)
               

               
               27-136, gnl|monDom2|scaffold_66 (4269758-4269876)
               

               
               27-136, gnl|oryCun1|scaffold_211229 (16918-16805)
               

               
               27-136, gnl|panTro1|chr19_random (44573440-44573327)
               

               
               27-136, gnl|rheMac2|chr16 (7067796-7067909)
               

               
               27-136, gnl|rn3|chr10 (56757454-56757341)
               

               
               27-136, gnl|tetNig1|chr1 (12116212-12116325)
               


               
               294-551, gnl|bosTau2|chr19 (20891091-20890834)
               

               
               294-551, gnl|Hg17|chr17 (7177670-7177933)
               

               
               294-551, gnl|Mm7|chr11 (69980670-69980419)
               


               
               744-904, gnl|bosTau2|chr19 (20889794-20889634)
               

               
               744-904, gnl|Hg17|chr17 (7179323-7179477)
               

               
               744-904, gnl|Mm7|chr11 (69979353-69979205)

Aligned organism(s): 23 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-136, gnl|bosTau2|chr19 (20891785-20891676)
               

               
               27-136, gnl|canFam2|chr5 (35285917-35286030)
               

               
               27-136, gnl|danRer3|chr22 (48084666-48084553)
               

               
               27-136, gnl|dasNov1|scaffold_187839 (4197-4084)
               

               
               27-136, gnl|echTel1|scaffold_310532 (93680-93567)
               

               
               27-136, gnl|fr1|chrUn (160257255-160257142)
               

               
               27-136, gnl|hg17|chr17 (7175970-7176083)
               

               
               27-136, gnl|Hg17|chr17 (7175970-7176079)
               

               
               27-136, gnl|loxAfr1|scaffold_38460 (41607-41494)
               

               
               27-136, gnl|mm7|chr11 (69981391-69981278)
               

               
               27-136, gnl|Mm7|chr11 (69981387-69981280)
               

               
               27-136, gnl|monDom2|scaffold_66 (4269758-4269876)
               

               
               27-136, gnl|oryCun1|scaffold_211229 (16918-16805)
               

               
               27-136, gnl|panTro1|chr19_random (44573440-44573327)
               

               
               27-136, gnl|rheMac2|chr16 (7067796-7067909)
               

               
               27-136, gnl|rn3|chr10 (56757454-56757341)
               

               
               27-136, gnl|tetNig1|chr1 (12116212-12116325)
               


               
               294-551, gnl|bosTau2|chr19 (20891091-20890834)
               

               
               294-551, gnl|Hg17|chr17 (7177670-7177933)
               

               
               294-551, gnl|Mm7|chr11 (69980670-69980419)
               


               
               744-904, gnl|bosTau2|chr19 (20889794-20889634)
               

               
               744-904, gnl|Hg17|chr17 (7179323-7179477)
               

               
               744-904, gnl|Mm7|chr11 (69979353-69979205)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	407-551, + strand, RNAz p=0.994147
	783-904, - strand, RNAz p=0.999207

	27-136, gnl\|bosTau2\|chr19 (20891785-20891676)
	27-136, gnl\|canFam2\|chr5 (35285917-35286030)
	27-136, gnl\|danRer3\|chr22 (48084666-48084553)
	27-136, gnl\|dasNov1\|scaffold_187839 (4197-4084)
	27-136, gnl\|echTel1\|scaffold_310532 (93680-93567)
	27-136, gnl\|fr1\|chrUn (160257255-160257142)
	27-136, gnl\|hg17\|chr17 (7175970-7176083)
	27-136, gnl\|Hg17\|chr17 (7175970-7176079)
	27-136, gnl\|loxAfr1\|scaffold_38460 (41607-41494)
	27-136, gnl\|mm7\|chr11 (69981391-69981278)
	27-136, gnl\|Mm7\|chr11 (69981387-69981280)
	27-136, gnl\|monDom2\|scaffold_66 (4269758-4269876)
	27-136, gnl\|oryCun1\|scaffold_211229 (16918-16805)
	27-136, gnl\|panTro1\|chr19_random (44573440-44573327)
	27-136, gnl\|rheMac2\|chr16 (7067796-7067909)
	27-136, gnl\|rn3\|chr10 (56757454-56757341)
	27-136, gnl\|tetNig1\|chr1 (12116212-12116325)

	294-551, gnl\|bosTau2\|chr19 (20891091-20890834)
	294-551, gnl\|Hg17\|chr17 (7177670-7177933)
	294-551, gnl\|Mm7\|chr11 (69980670-69980419)

	744-904, gnl\|bosTau2\|chr19 (20889794-20889634)
	744-904, gnl\|Hg17\|chr17 (7179323-7179477)
	744-904, gnl\|Mm7\|chr11 (69979353-69979205)