Non-Coding RNA Search

Ss1.1-Pig2-44M03.5

Sequence:


               
               AGAGCTTTCCTCAAGGCCCAGGCCGCCTTCTTCGGCAGCTACCGAAATGCTTTGAAAATT
GAGCCGGAGGAGCCAATCACCTTCTGTGAGGAAGCCTTCGTGTCCCACTATCGCTCAGGA
GCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAACAGTTTATCGAT
GGTAGATTAGACCTTCTCAATTCTGGCGAGGGCTTCAGTGACGTTTTTGAAGAAGAGATC
AACATGGGCGAGTATGCCGGAAGCGACAAGCTGTACCACCAGTGGCTCTCCACAGTCCGG
AAAGGAAGTGGAGCAATTCTGAATACTGTAAAAACGAAAGCAAACCCAGCCATGAAGACT
GTCTACAAATTCGCAAAAGATCATGGCTGCTGCGTTATTCCCTAAAGCTCTCAATGCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCTTTCCTCAAGGCCCAGGCCGCCTTCTTCGGCAGCTACCGAAATGCTTTGAAAATT
GAGCCGGAGGAGCCAATCACCTTCTGTGAGGAAGCCTTCGTGTCCCACTATCGCTCAGGA
GCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAACAGTTTATCGAT
GGTAGATTAGACCTTCTCAATTCTGGCGAGGGCTTCAGTGACGTTTTTGAAGAAGAGATC
AACATGGGCGAGTATGCCGGAAGCGACAAGCTGTACCACCAGTGGCTCTCCACAGTCCGG
AAAGGAAGTGGAGCAATTCTGAATACTGTAAAAACGAAAGCAAACCCAGCCATGAAGACT
GTCTACAAATTCGCAAAAGATCATGGCTGCTGCGTTATTCCCTAAAGCTCTCAATGCGCT

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               66-171, gnl|bosTau2|chr11 (76171206-76171101)
               

               
               66-171, gnl|canFam2|chr9 (62699394-62699285)
               

               
               66-171, gnl|danRer3|chrUn (21413501-21413607)
               

               
               66-171, gnl|echTel1|scaffold_298074 (112787-112896)
               

               
               66-171, gnl|fr1|chrUn (219620680-219620786)
               

               
               66-171, gnl|galGal2|chr17 (1371000-1370894)
               

               
               66-171, gnl|hg17|chr9 (123299625-123299734)
               

               
               66-171, gnl|Hg17|chr9 (123299731-123299626)
               

               
               66-171, gnl|loxAfr1|scaffold_19095 (33002-32891)
               

               
               66-171, gnl|mm7|chr2 (37865678-37865787)
               

               
               66-171, gnl|Mm7|chr2 (37865784-37865679)
               

               
               66-171, gnl|monDom2|scaffold_38 (17116132-17116238)
               

               
               66-171, gnl|oryCun1|scaffold_210157 (57623-57732)
               

               
               66-171, gnl|panTro1|chr11 (108043275-108043384)
               

               
               66-171, gnl|rheMac2|chr15 (12278128-12278019)
               

               
               66-171, gnl|rn3|chr3 (17518208-17518317)
               

               
               66-171, gnl|tetNig1|chrUn_random (60735242-60735348)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-171, gnl|bosTau2|chr11 (76171206-76171101)
               

               
               66-171, gnl|canFam2|chr9 (62699394-62699285)
               

               
               66-171, gnl|danRer3|chrUn (21413501-21413607)
               

               
               66-171, gnl|echTel1|scaffold_298074 (112787-112896)
               

               
               66-171, gnl|fr1|chrUn (219620680-219620786)
               

               
               66-171, gnl|galGal2|chr17 (1371000-1370894)
               

               
               66-171, gnl|hg17|chr9 (123299625-123299734)
               

               
               66-171, gnl|Hg17|chr9 (123299731-123299626)
               

               
               66-171, gnl|loxAfr1|scaffold_19095 (33002-32891)
               

               
               66-171, gnl|mm7|chr2 (37865678-37865787)
               

               
               66-171, gnl|Mm7|chr2 (37865784-37865679)
               

               
               66-171, gnl|monDom2|scaffold_38 (17116132-17116238)
               

               
               66-171, gnl|oryCun1|scaffold_210157 (57623-57732)
               

               
               66-171, gnl|panTro1|chr11 (108043275-108043384)
               

               
               66-171, gnl|rheMac2|chr15 (12278128-12278019)
               

               
               66-171, gnl|rn3|chr3 (17518208-17518317)
               

               
               66-171, gnl|tetNig1|chrUn_random (60735242-60735348)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eru (0.120048)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	66-171, gnl\|bosTau2\|chr11 (76171206-76171101)
	66-171, gnl\|canFam2\|chr9 (62699394-62699285)
	66-171, gnl\|danRer3\|chrUn (21413501-21413607)
	66-171, gnl\|echTel1\|scaffold_298074 (112787-112896)
	66-171, gnl\|fr1\|chrUn (219620680-219620786)
	66-171, gnl\|galGal2\|chr17 (1371000-1370894)
	66-171, gnl\|hg17\|chr9 (123299625-123299734)
	66-171, gnl\|Hg17\|chr9 (123299731-123299626)
	66-171, gnl\|loxAfr1\|scaffold_19095 (33002-32891)
	66-171, gnl\|mm7\|chr2 (37865678-37865787)
	66-171, gnl\|Mm7\|chr2 (37865784-37865679)
	66-171, gnl\|monDom2\|scaffold_38 (17116132-17116238)
	66-171, gnl\|oryCun1\|scaffold_210157 (57623-57732)
	66-171, gnl\|panTro1\|chr11 (108043275-108043384)
	66-171, gnl\|rheMac2\|chr15 (12278128-12278019)
	66-171, gnl\|rn3\|chr3 (17518208-17518317)
	66-171, gnl\|tetNig1\|chrUn_random (60735242-60735348)