Non-Coding RNA Search

Ss1.1-Pig2-44O23.5

Sequence:


               
               TCGACCAGGACAACCGAAGCACGTCCCCCAGCATCTACAGCCCCGGGAGTGTGGAGAATG
ACTCCGACTCGTCTTCTGGCCTGTCCCAGGGCCCAGCCCGCCCCTACCACCCACCTCCAC
TCTTTCCTCCTTCCCCTCCGCCACCAGACAGCACCCCCCGACAGCCAGAGCCTGGTTTTG
AACCCCATCCTTCTGTGACACCCACTGGATATCATGCTCCCATGGAGCCCCCCACATCGC
GAATGTTCCAGGCTCCACCAGGGGCCCCTCCCCCGCATCCACAGCTCTATCCTGGGGGCA
CTGGTGGAGGAGTTTTATCTGGACCCCCAATGGGTTCCAAAGGGGGAGGGGCTGCTTCTT
CAGCGGTGGCCCCTAGTGGGGGTAAGCAGCACCCCCCTCTCCACCACCCCCATTTCAATA
TCGAGCTCCGCGGCTGGTGGTGCTCCTCCAACAAAGCCGCCTAACACTCCAGTTGGTGGT
GGGAAGCTACCCACTGCTCCACCACCAGCCACTTTCCCTCACGTGACACCAAACCTGCCT
CCCCCACCTGCCCTGAGACCCCTTAACAATGCATCAGCCTCTCCTCCTGGCCTGGGGGCC
CAGCCGCTACCTGGGCATCTGCCCTCTCCCCATTCCATGGGGCAGGGTATGGGTGGACTT
CCTCCTGGCCCAGAGAAGGGCCCTACTCTTGCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGACCAGGACAACCGAAGCACGTCCCCCAGCATCTACAGCCCCGGGAGTGTGGAGAATG
ACTCCGACTCGTCTTCTGGCCTGTCCCAGGGCCCAGCCCGCCCCTACCACCCACCTCCAC
TCTTTCCTCCTTCCCCTCCGCCACCAGACAGCACCCCCCGACAGCCAGAGCCTGGTTTTG
AACCCCATCCTTCTGTGACACCCACTGGATATCATGCTCCCATGGAGCCCCCCACATCGC
GAATGTTCCAGGCTCCACCAGGGGCCCCTCCCCCGCATCCACAGCTCTATCCTGGGGGCA
CTGGTGGAGGAGTTTTATCTGGACCCCCAATGGGTTCCAAAGGGGGAGGGGCTGCTTCTT
CAGCGGTGGCCCCTAGTGGGGGTAAGCAGCACCCCCCTCTCCACCACCCCCATTTCAATA
TCGAGCTCCGCGGCTGGTGGTGCTCCTCCAACAAAGCCGCCTAACACTCCAGTTGGTGGT
GGGAAGCTACCCACTGCTCCACCACCAGCCACTTTCCCTCACGTGACACCAAACCTGCCT
CCCCCACCTGCCCTGAGACCCCTTAACAATGCATCAGCCTCTCCTCCTGGCCTGGGGGCC
CAGCCGCTACCTGGGCATCTGCCCTCTCCCCATTCCATGGGGCAGGGTATGGGTGGACTT
CCTCCTGGCCCAGAGAAGGGCCCTACTCTTGCTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-695, + strand, RNAz p=0.997409

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-695, + strand, RNAz p=0.997409

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               48-511, UI-HF-BN0-ali-c-12-0-UI.r1 NIH_MGC_50 Homo sapiens cDNA clone 
(gb|AW504072.1|), blast E-value=0, identity=91.16% 
               

               
               201-695, AGENCOURT_8810850 NIH_MGC_101 Homo sapiens cDNA clone IMAGE 
(gb|BQ935120.1|), blast E-value=0, identity=90.51% 
               

               
               48-695, AGENCOURT_8777200 NIH_MGC_40 Homo sapiens cDNA clone IMAGE 
(gb|BQ957462.1|), blast E-value=0, identity=91.36% 
               

               
               48-665, AGENCOURT_7926796 NIH_MGC_70 Homo sapiens cDNA clone IMAGE 
(gb|BU164569.1|), blast E-value=0, identity=89.53% 
               

               
               124-695, AGENCOURT_10170907 NIH_MGC_71 Homo sapiens cDNA clone IMAGE 
(gb|BU509705.1|), blast E-value=0, identity=90.38% 
               

               
               48-530, AGENCOURT_10186545 NIH_MGC_107 Homo sapiens cDNA clone (gb|BU538239.1|), 
blast E-value=0, identity=90.68%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               48-511, UI-HF-BN0-ali-c-12-0-UI.r1 NIH_MGC_50 Homo sapiens cDNA clone 
(gb|AW504072.1|), blast E-value=0, identity=91.16% 
               

               
               201-695, AGENCOURT_8810850 NIH_MGC_101 Homo sapiens cDNA clone IMAGE 
(gb|BQ935120.1|), blast E-value=0, identity=90.51% 
               

               
               48-695, AGENCOURT_8777200 NIH_MGC_40 Homo sapiens cDNA clone IMAGE 
(gb|BQ957462.1|), blast E-value=0, identity=91.36% 
               

               
               48-665, AGENCOURT_7926796 NIH_MGC_70 Homo sapiens cDNA clone IMAGE 
(gb|BU164569.1|), blast E-value=0, identity=89.53% 
               

               
               124-695, AGENCOURT_10170907 NIH_MGC_71 Homo sapiens cDNA clone IMAGE 
(gb|BU509705.1|), blast E-value=0, identity=90.38% 
               

               
               48-530, AGENCOURT_10186545 NIH_MGC_107 Homo sapiens cDNA clone (gb|BU538239.1|), 
blast E-value=0, identity=90.68%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-695, gnl|bosTau2|chr5 (60337746-60337053)
               

               
               1-695, gnl|Hg17|chr12 (6915062-6915752)
               

               
               1-695, gnl|Mm7|chr6 (124773127-124772431)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-695, gnl|bosTau2|chr5 (60337746-60337053)
               

               
               1-695, gnl|Hg17|chr12 (6915062-6915752)
               

               
               1-695, gnl|Mm7|chr6 (124773127-124772431)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	48-511, UI-HF-BN0-ali-c-12-0-UI.r1 NIH_MGC_50 Homo sapiens cDNA clone (gb\|AW504072.1\|), blast E-value=0, identity=91.16%
	201-695, AGENCOURT_8810850 NIH_MGC_101 Homo sapiens cDNA clone IMAGE (gb\|BQ935120.1\|), blast E-value=0, identity=90.51%
	48-695, AGENCOURT_8777200 NIH_MGC_40 Homo sapiens cDNA clone IMAGE (gb\|BQ957462.1\|), blast E-value=0, identity=91.36%
	48-665, AGENCOURT_7926796 NIH_MGC_70 Homo sapiens cDNA clone IMAGE (gb\|BU164569.1\|), blast E-value=0, identity=89.53%
	124-695, AGENCOURT_10170907 NIH_MGC_71 Homo sapiens cDNA clone IMAGE (gb\|BU509705.1\|), blast E-value=0, identity=90.38%
	48-530, AGENCOURT_10186545 NIH_MGC_107 Homo sapiens cDNA clone (gb\|BU538239.1\|), blast E-value=0, identity=90.68%

	1-695, gnl\|bosTau2\|chr5 (60337746-60337053)
	1-695, gnl\|Hg17\|chr12 (6915062-6915752)
	1-695, gnl\|Mm7\|chr6 (124773127-124772431)